miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25391 5' -52.9 NC_005336.1 + 88797 0.66 0.969488
Target:  5'- cCAGCAAGcgcuuCCGcuUCUGCGCGAg- -3'
miRNA:   3'- aGUCGUUCuucu-GGU--AGGCGCGCUag -5'
25391 5' -52.9 NC_005336.1 + 89088 0.66 0.969488
Target:  5'- gUCGGUcgucGgcGACCuugCCGCGCGcgCg -3'
miRNA:   3'- -AGUCGuu--CuuCUGGua-GGCGCGCuaG- -5'
25391 5' -52.9 NC_005336.1 + 86419 0.66 0.969488
Target:  5'- --cGCAcGAAGGCCGUgaaGCGCGAggUCa -3'
miRNA:   3'- aguCGUuCUUCUGGUAgg-CGCGCU--AG- -5'
25391 5' -52.9 NC_005336.1 + 94954 0.66 0.969488
Target:  5'- cCGGCAGGGGcGGCaGUagcagCGCGCGGUCc -3'
miRNA:   3'- aGUCGUUCUU-CUGgUAg----GCGCGCUAG- -5'
25391 5' -52.9 NC_005336.1 + 107527 0.66 0.969488
Target:  5'- aCGGCAucgcgccgauGAAcACCGgcuUCCGCGCGGUg -3'
miRNA:   3'- aGUCGUu---------CUUcUGGU---AGGCGCGCUAg -5'
25391 5' -52.9 NC_005336.1 + 89467 0.66 0.967613
Target:  5'- cUAGCGAcGAGGCCAgcaagucgaacaagUCGCGCGAa- -3'
miRNA:   3'- aGUCGUUcUUCUGGUa-------------GGCGCGCUag -5'
25391 5' -52.9 NC_005336.1 + 25287 0.66 0.966318
Target:  5'- cCAGCGAcuAGGGCCAaagUCCaugguGCGCGAUa -3'
miRNA:   3'- aGUCGUUc-UUCUGGU---AGG-----CGCGCUAg -5'
25391 5' -52.9 NC_005336.1 + 92930 0.66 0.966318
Target:  5'- uUCGGCAAGgcG-CCG--CGCGCGAg- -3'
miRNA:   3'- -AGUCGUUCuuCuGGUagGCGCGCUag -5'
25391 5' -52.9 NC_005336.1 + 3457 0.66 0.966318
Target:  5'- gUCAcCGAGgcGgaGCCGUUCGCGCGGa- -3'
miRNA:   3'- -AGUcGUUCuuC--UGGUAGGCGCGCUag -5'
25391 5' -52.9 NC_005336.1 + 35346 0.66 0.966318
Target:  5'- cCAGCGAGGGcgcGCCGcggCGCGCGAUg -3'
miRNA:   3'- aGUCGUUCUUc--UGGUag-GCGCGCUAg -5'
25391 5' -52.9 NC_005336.1 + 3457 0.66 0.966318
Target:  5'- gUCAcCGAGgcGgaGCCGUUCGCGCGGa- -3'
miRNA:   3'- -AGUcGUUCuuC--UGGUAGGCGCGCUag -5'
25391 5' -52.9 NC_005336.1 + 104688 0.66 0.966318
Target:  5'- cUCAGCAGGAAGAUgCAgcgcCCGCcagGCGGn- -3'
miRNA:   3'- -AGUCGUUCUUCUG-GUa---GGCG---CGCUag -5'
25391 5' -52.9 NC_005336.1 + 101777 0.66 0.966318
Target:  5'- -gAGCGGGAAcacGGCCAUgggaaCGCGCGccGUCg -3'
miRNA:   3'- agUCGUUCUU---CUGGUAg----GCGCGC--UAG- -5'
25391 5' -52.9 NC_005336.1 + 130110 0.66 0.965989
Target:  5'- gCGGCcgccgccGAGGAGGCCG-CCGcCGCGGc- -3'
miRNA:   3'- aGUCG-------UUCUUCUGGUaGGC-GCGCUag -5'
25391 5' -52.9 NC_005336.1 + 18287 0.66 0.962923
Target:  5'- -gAGCGGGggGAgCgcaagGUCCGCGCa--- -3'
miRNA:   3'- agUCGUUCuuCUgG-----UAGGCGCGcuag -5'
25391 5' -52.9 NC_005336.1 + 126679 0.66 0.962923
Target:  5'- cUCGGCGccuGGcugcAGGCCGUCgCGCGCGu-- -3'
miRNA:   3'- -AGUCGUu--CU----UCUGGUAG-GCGCGCuag -5'
25391 5' -52.9 NC_005336.1 + 117086 0.66 0.960775
Target:  5'- cUCGcGCAGGAAggggcgcauggccgcGACCA-CCGCGgGGUUg -3'
miRNA:   3'- -AGU-CGUUCUU---------------CUGGUaGGCGCgCUAG- -5'
25391 5' -52.9 NC_005336.1 + 44724 0.66 0.959296
Target:  5'- cCAuCGAGGAcGugUGUCCGCGCGGc- -3'
miRNA:   3'- aGUcGUUCUU-CugGUAGGCGCGCUag -5'
25391 5' -52.9 NC_005336.1 + 45524 0.66 0.959296
Target:  5'- cCAGCGGGcuGGACa--CCGCGCcGUCg -3'
miRNA:   3'- aGUCGUUCu-UCUGguaGGCGCGcUAG- -5'
25391 5' -52.9 NC_005336.1 + 73702 0.66 0.959296
Target:  5'- gCGGCAAcgucgcGGAGGCgGUCaUGCGCGAg- -3'
miRNA:   3'- aGUCGUU------CUUCUGgUAG-GCGCGCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.