miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25391 5' -52.9 NC_005336.1 + 995 0.69 0.882473
Target:  5'- gUUGGCGAGAGGuCC-UCUG-GCGGUCg -3'
miRNA:   3'- -AGUCGUUCUUCuGGuAGGCgCGCUAG- -5'
25391 5' -52.9 NC_005336.1 + 995 0.69 0.882473
Target:  5'- gUUGGCGAGAGGuCC-UCUG-GCGGUCg -3'
miRNA:   3'- -AGUCGUUCUUCuGGuAGGCgCGCUAG- -5'
25391 5' -52.9 NC_005336.1 + 1627 0.66 0.955432
Target:  5'- -gAGCGAGuucGCCGUUcucucgcucgCGCGCGGUCa -3'
miRNA:   3'- agUCGUUCuucUGGUAG----------GCGCGCUAG- -5'
25391 5' -52.9 NC_005336.1 + 1627 0.66 0.955432
Target:  5'- -gAGCGAGuucGCCGUUcucucgcucgCGCGCGGUCa -3'
miRNA:   3'- agUCGUUCuucUGGUAG----------GCGCGCUAG- -5'
25391 5' -52.9 NC_005336.1 + 3457 0.66 0.966318
Target:  5'- gUCAcCGAGgcGgaGCCGUUCGCGCGGa- -3'
miRNA:   3'- -AGUcGUUCuuC--UGGUAGGCGCGCUag -5'
25391 5' -52.9 NC_005336.1 + 3457 0.66 0.966318
Target:  5'- gUCAcCGAGgcGgaGCCGUUCGCGCGGa- -3'
miRNA:   3'- -AGUcGUUCuuC--UGGUAGGCGCGCUag -5'
25391 5' -52.9 NC_005336.1 + 3638 0.71 0.799384
Target:  5'- cCGGCGGGAGGGagGUCUGCGCGccgCg -3'
miRNA:   3'- aGUCGUUCUUCUggUAGGCGCGCua-G- -5'
25391 5' -52.9 NC_005336.1 + 3638 0.71 0.799384
Target:  5'- cCGGCGGGAGGGagGUCUGCGCGccgCg -3'
miRNA:   3'- aGUCGUUCUUCUggUAGGCGCGCua-G- -5'
25391 5' -52.9 NC_005336.1 + 4043 0.68 0.909453
Target:  5'- cCGGCGAGggGcGCCG--CGCGCGGa- -3'
miRNA:   3'- aGUCGUUCuuC-UGGUagGCGCGCUag -5'
25391 5' -52.9 NC_005336.1 + 5809 0.71 0.808561
Target:  5'- --cGCAGGcggccGAGGCCGgcgCCGCGCGcgCg -3'
miRNA:   3'- aguCGUUC-----UUCUGGUa--GGCGCGCuaG- -5'
25391 5' -52.9 NC_005336.1 + 5952 0.67 0.937026
Target:  5'- cCAGCGGGAGaacacgucgcggcGcACCAgCCGCGCGGg- -3'
miRNA:   3'- aGUCGUUCUU-------------C-UGGUaGGCGCGCUag -5'
25391 5' -52.9 NC_005336.1 + 6073 0.67 0.937525
Target:  5'- gCAGCGcguGGAAGcCCGgguccUCCGCgGCGAUg -3'
miRNA:   3'- aGUCGU---UCUUCuGGU-----AGGCG-CGCUAg -5'
25391 5' -52.9 NC_005336.1 + 6342 0.67 0.951327
Target:  5'- gCAGCAGGc--GCCGUggcugaacaccgCCGCGCGGUg -3'
miRNA:   3'- aGUCGUUCuucUGGUA------------GGCGCGCUAg -5'
25391 5' -52.9 NC_005336.1 + 8182 0.74 0.637351
Target:  5'- gCGGCAGGAAGAaCAUcgaCCGCGCGGc- -3'
miRNA:   3'- aGUCGUUCUUCUgGUA---GGCGCGCUag -5'
25391 5' -52.9 NC_005336.1 + 10805 0.67 0.946528
Target:  5'- aUAGCGGGGcuugcgggcguucGGACCuUCCGCGCu--- -3'
miRNA:   3'- aGUCGUUCU-------------UCUGGuAGGCGCGcuag -5'
25391 5' -52.9 NC_005336.1 + 11641 0.69 0.867545
Target:  5'- gCAGCGAGAAGAgcgUCGUCgGCgGCGcgCc -3'
miRNA:   3'- aGUCGUUCUUCU---GGUAGgCG-CGCuaG- -5'
25391 5' -52.9 NC_005336.1 + 12287 0.68 0.903078
Target:  5'- uUCAGCAcagcGggGuCCAcgUCGCGgGAUCg -3'
miRNA:   3'- -AGUCGUu---CuuCuGGUa-GGCGCgCUAG- -5'
25391 5' -52.9 NC_005336.1 + 13793 0.67 0.951327
Target:  5'- --cGCGcGAAGGCCAcgCGCGCGAa- -3'
miRNA:   3'- aguCGUuCUUCUGGUagGCGCGCUag -5'
25391 5' -52.9 NC_005336.1 + 14360 0.68 0.909453
Target:  5'- cUCcGCGAGcAGcCCcgCgGCGCGGUCg -3'
miRNA:   3'- -AGuCGUUCuUCuGGuaGgCGCGCUAG- -5'
25391 5' -52.9 NC_005336.1 + 14875 0.67 0.937525
Target:  5'- aCAGCGAGAGcACguCGUCgCGCGCGcgCc -3'
miRNA:   3'- aGUCGUUCUUcUG--GUAG-GCGCGCuaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.