miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25395 5' -53.4 NC_005336.1 + 93766 0.66 0.96486
Target:  5'- cGuGGccAGcgUGCUCGUCGgCGAGCUCAu -3'
miRNA:   3'- cCuCC--UCa-GCGAGUAGUgGUUCGAGU- -5'
25395 5' -53.4 NC_005336.1 + 13727 0.66 0.96139
Target:  5'- --cGGAGUCGCUagaGUCGCCccAGCcuUCGu -3'
miRNA:   3'- ccuCCUCAGCGAg--UAGUGGu-UCG--AGU- -5'
25395 5' -53.4 NC_005336.1 + 96713 0.66 0.96139
Target:  5'- gGGGGGAGUCGg-CAgUGCCGGGgUCu -3'
miRNA:   3'- -CCUCCUCAGCgaGUaGUGGUUCgAGu -5'
25395 5' -53.4 NC_005336.1 + 109666 0.66 0.960305
Target:  5'- cGAGGaAGUCGCgcagcuggcggcggUCGUCcaGCCAGGCg-- -3'
miRNA:   3'- cCUCC-UCAGCG--------------AGUAG--UGGUUCGagu -5'
25395 5' -53.4 NC_005336.1 + 60625 0.66 0.959198
Target:  5'- aGGGGuacGGGUCGCUaaagcggaacacguaCAUgGCCGGGUUCGc -3'
miRNA:   3'- -CCUC---CUCAGCGA---------------GUAgUGGUUCGAGU- -5'
25395 5' -53.4 NC_005336.1 + 58242 0.66 0.955357
Target:  5'- uGGAGGAGgccaUGCUCAUgaucucgcgguacugCACCAucCUCAu -3'
miRNA:   3'- -CCUCCUCa---GCGAGUA---------------GUGGUucGAGU- -5'
25395 5' -53.4 NC_005336.1 + 129933 0.66 0.949579
Target:  5'- cGGAGGuGGUgcacgaGCUCAUCcGCCAcggcuGCUCGc -3'
miRNA:   3'- -CCUCC-UCAg-----CGAGUAG-UGGUu----CGAGU- -5'
25395 5' -53.4 NC_005336.1 + 121218 0.66 0.949148
Target:  5'- cGGAGGAGUaCGUg---CGCCGguucgcguucucgGGCUCGc -3'
miRNA:   3'- -CCUCCUCA-GCGaguaGUGGU-------------UCGAGU- -5'
25395 5' -53.4 NC_005336.1 + 28558 0.67 0.945159
Target:  5'- cGAGGAGcUCGaguacaaccuCUCgGUCGCCAAGCgCAa -3'
miRNA:   3'- cCUCCUC-AGC----------GAG-UAGUGGUUCGaGU- -5'
25395 5' -53.4 NC_005336.1 + 99019 0.67 0.945159
Target:  5'- --cGGAG-CgGCUgGUgGCCGGGCUCAa -3'
miRNA:   3'- ccuCCUCaG-CGAgUAgUGGUUCGAGU- -5'
25395 5' -53.4 NC_005336.1 + 122248 0.67 0.945159
Target:  5'- cGAGGAcauggucuucgGUCGCUgCAUCAUgGAGCgcggCAc -3'
miRNA:   3'- cCUCCU-----------CAGCGA-GUAGUGgUUCGa---GU- -5'
25395 5' -53.4 NC_005336.1 + 116547 0.67 0.929351
Target:  5'- aGAGGAuGUUGaagaugggCACCGAGCUCAg -3'
miRNA:   3'- cCUCCU-CAGCgagua---GUGGUUCGAGU- -5'
25395 5' -53.4 NC_005336.1 + 51794 0.67 0.928816
Target:  5'- uGGAGGaAGauaacuccuucuucUCGUUCGUCGCCGcGCUg- -3'
miRNA:   3'- -CCUCC-UC--------------AGCGAGUAGUGGUuCGAgu -5'
25395 5' -53.4 NC_005336.1 + 124324 0.67 0.924998
Target:  5'- aGGAGGAGcUCGCg---CGCCA-GUUCu -3'
miRNA:   3'- -CCUCCUC-AGCGaguaGUGGUuCGAGu -5'
25395 5' -53.4 NC_005336.1 + 51931 0.67 0.91933
Target:  5'- cGAGGAG-CgGCUCAUC-CgCGAGUUCGc -3'
miRNA:   3'- cCUCCUCaG-CGAGUAGuG-GUUCGAGU- -5'
25395 5' -53.4 NC_005336.1 + 24131 0.68 0.915809
Target:  5'- uGGAGGAGUucuccgCGCUCugucccggggaccagAUCACCGcGCUg- -3'
miRNA:   3'- -CCUCCUCA------GCGAG---------------UAGUGGUuCGAgu -5'
25395 5' -53.4 NC_005336.1 + 38239 0.68 0.913412
Target:  5'- --cGGcG-CGCgCGUCGCCGAGCUCGc -3'
miRNA:   3'- ccuCCuCaGCGaGUAGUGGUUCGAGU- -5'
25395 5' -53.4 NC_005336.1 + 106616 0.68 0.903425
Target:  5'- cGuGGAGUCGCUCAccgugcagagcacgCGCaugGAGCUCGg -3'
miRNA:   3'- cCuCCUCAGCGAGUa-------------GUGg--UUCGAGU- -5'
25395 5' -53.4 NC_005336.1 + 100785 0.68 0.89417
Target:  5'- cGAGGAgGUCGCg---CGCCGgGGCUCGc -3'
miRNA:   3'- cCUCCU-CAGCGaguaGUGGU-UCGAGU- -5'
25395 5' -53.4 NC_005336.1 + 21493 0.68 0.88727
Target:  5'- uGGAGGuGGcCGCgcgCGcgGCCGAGCUCGc -3'
miRNA:   3'- -CCUCC-UCaGCGa--GUagUGGUUCGAGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.