miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
254 3' -63.6 AC_000008.1 + 12331 0.66 0.213005
Target:  5'- -cGguGCGGgCGgcGCUGCagaGCCagCCg -3'
miRNA:   3'- uuCguCGCCgGCuuCGACGg--CGGg-GG- -5'
254 3' -63.6 AC_000008.1 + 8473 0.66 0.20747
Target:  5'- uGGUGGCGGCguCGAuGGCUugcaagagGCCGCauCCCCg -3'
miRNA:   3'- uUCGUCGCCG--GCU-UCGA--------CGGCG--GGGG- -5'
254 3' -63.6 AC_000008.1 + 23301 0.66 0.20206
Target:  5'- gAAGCAGCGcGUCGuAGaccagGCCGgCCUCg -3'
miRNA:   3'- -UUCGUCGC-CGGCuUCga---CGGCgGGGG- -5'
254 3' -63.6 AC_000008.1 + 19708 0.66 0.20206
Target:  5'- cGGCGGCGGUggCGAcguGCUaCgCGCCUCCg -3'
miRNA:   3'- uUCGUCGCCG--GCUu--CGAcG-GCGGGGG- -5'
254 3' -63.6 AC_000008.1 + 15522 0.66 0.191607
Target:  5'- cGGUGGUGGgCGccGAGCUGuuGCCCg- -3'
miRNA:   3'- uUCGUCGCCgGC--UUCGACggCGGGgg -5'
254 3' -63.6 AC_000008.1 + 9696 0.66 0.18656
Target:  5'- uGGGUGGCGGCgGcAGCUGCaGCUUCUu -3'
miRNA:   3'- -UUCGUCGCCGgCuUCGACGgCGGGGG- -5'
254 3' -63.6 AC_000008.1 + 27243 0.66 0.18656
Target:  5'- -cGCGGC-GCCGAcG-UGCCccuGCCCCCu -3'
miRNA:   3'- uuCGUCGcCGGCUuCgACGG---CGGGGG- -5'
254 3' -63.6 AC_000008.1 + 2179 0.67 0.181631
Target:  5'- cAGGCGGCGGCgGcAGgaGCagaGCCCa- -3'
miRNA:   3'- -UUCGUCGCCGgCuUCgaCGg--CGGGgg -5'
254 3' -63.6 AC_000008.1 + 9753 0.67 0.163052
Target:  5'- cGGGCGGCGGUCGggGUUGUuucuggcggaggUGCUgCUg -3'
miRNA:   3'- -UUCGUCGCCGGCuuCGACG------------GCGGgGG- -5'
254 3' -63.6 AC_000008.1 + 30489 0.67 0.163052
Target:  5'- aGGGCAGCGGCCGAgcaacAGC-GCaugaaucaagaGCUCCa -3'
miRNA:   3'- -UUCGUCGCCGGCU-----UCGaCGg----------CGGGGg -5'
254 3' -63.6 AC_000008.1 + 17654 0.67 0.163052
Target:  5'- -uGCAGauauGGCCcucacCUGCCGCCUCCg -3'
miRNA:   3'- uuCGUCg---CCGGcuuc-GACGGCGGGGG- -5'
254 3' -63.6 AC_000008.1 + 22934 0.67 0.158682
Target:  5'- -cGC-GCGGUCGccuguGGgaGCCGCaCCCCc -3'
miRNA:   3'- uuCGuCGCCGGCu----UCgaCGGCG-GGGG- -5'
254 3' -63.6 AC_000008.1 + 16330 0.68 0.154418
Target:  5'- cGAGCGGCcGCCGcAGCaGCCGCggCCa -3'
miRNA:   3'- -UUCGUCGcCGGCuUCGaCGGCGggGG- -5'
254 3' -63.6 AC_000008.1 + 13647 0.68 0.150258
Target:  5'- cAAGCAGCuuGuCCGAucuaggcGCUGCgGCCCCg -3'
miRNA:   3'- -UUCGUCGc-C-GGCUu------CGACGgCGGGGg -5'
254 3' -63.6 AC_000008.1 + 19812 0.68 0.150258
Target:  5'- uGGUGGCGGCgUGGgcguguAGUUGCgCGCCUCCu -3'
miRNA:   3'- uUCGUCGCCG-GCU------UCGACG-GCGGGGG- -5'
254 3' -63.6 AC_000008.1 + 17278 0.68 0.138384
Target:  5'- -uGCAgGCGGUCGcuGCgGCCGCgUCCa -3'
miRNA:   3'- uuCGU-CGCCGGCuuCGaCGGCGgGGG- -5'
254 3' -63.6 AC_000008.1 + 9170 0.69 0.117183
Target:  5'- uGGCcGCuGCUGuuGCUGCCGCUgCCg -3'
miRNA:   3'- uUCGuCGcCGGCuuCGACGGCGGgGG- -5'
254 3' -63.6 AC_000008.1 + 10006 0.71 0.090998
Target:  5'- cGGCGGCGGCgGAguuuggccguAGgUGgCGCCCUCu -3'
miRNA:   3'- uUCGUCGCCGgCU----------UCgACgGCGGGGG- -5'
254 3' -63.6 AC_000008.1 + 33211 0.72 0.07043
Target:  5'- cAGCAGC-GCgCGAAuaaacuGCUGCCGCCgCCg -3'
miRNA:   3'- uUCGUCGcCG-GCUU------CGACGGCGGgGG- -5'
254 3' -63.6 AC_000008.1 + 9283 0.8 0.015022
Target:  5'- aAAGCGGCGGgCGAAGgagaUGuuGCCCCCa -3'
miRNA:   3'- -UUCGUCGCCgGCUUCg---ACggCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.