Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
254 | 3' | -63.6 | AC_000008.1 | + | 15206 | 1.09 | 0.000068 |
Target: 5'- gAAGCAGCGGCCGAAGCUGCCGCCCCCg -3' miRNA: 3'- -UUCGUCGCCGGCUUCGACGGCGGGGG- -5' |
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254 | 3' | -63.6 | AC_000008.1 | + | 12331 | 0.66 | 0.213005 |
Target: 5'- -cGguGCGGgCGgcGCUGCagaGCCagCCg -3' miRNA: 3'- uuCguCGCCgGCuuCGACGg--CGGg-GG- -5' |
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254 | 3' | -63.6 | AC_000008.1 | + | 8473 | 0.66 | 0.20747 |
Target: 5'- uGGUGGCGGCguCGAuGGCUugcaagagGCCGCauCCCCg -3' miRNA: 3'- uUCGUCGCCG--GCU-UCGA--------CGGCG--GGGG- -5' |
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254 | 3' | -63.6 | AC_000008.1 | + | 15522 | 0.66 | 0.191607 |
Target: 5'- cGGUGGUGGgCGccGAGCUGuuGCCCg- -3' miRNA: 3'- uUCGUCGCCgGC--UUCGACggCGGGgg -5' |
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254 | 3' | -63.6 | AC_000008.1 | + | 2179 | 0.67 | 0.181631 |
Target: 5'- cAGGCGGCGGCgGcAGgaGCagaGCCCa- -3' miRNA: 3'- -UUCGUCGCCGgCuUCgaCGg--CGGGgg -5' |
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254 | 3' | -63.6 | AC_000008.1 | + | 9753 | 0.67 | 0.163052 |
Target: 5'- cGGGCGGCGGUCGggGUUGUuucuggcggaggUGCUgCUg -3' miRNA: 3'- -UUCGUCGCCGGCuuCGACG------------GCGGgGG- -5' |
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254 | 3' | -63.6 | AC_000008.1 | + | 30489 | 0.67 | 0.163052 |
Target: 5'- aGGGCAGCGGCCGAgcaacAGC-GCaugaaucaagaGCUCCa -3' miRNA: 3'- -UUCGUCGCCGGCU-----UCGaCGg----------CGGGGg -5' |
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254 | 3' | -63.6 | AC_000008.1 | + | 17654 | 0.67 | 0.163052 |
Target: 5'- -uGCAGauauGGCCcucacCUGCCGCCUCCg -3' miRNA: 3'- uuCGUCg---CCGGcuuc-GACGGCGGGGG- -5' |
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254 | 3' | -63.6 | AC_000008.1 | + | 16330 | 0.68 | 0.154418 |
Target: 5'- cGAGCGGCcGCCGcAGCaGCCGCggCCa -3' miRNA: 3'- -UUCGUCGcCGGCuUCGaCGGCGggGG- -5' |
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254 | 3' | -63.6 | AC_000008.1 | + | 13647 | 0.68 | 0.150258 |
Target: 5'- cAAGCAGCuuGuCCGAucuaggcGCUGCgGCCCCg -3' miRNA: 3'- -UUCGUCGc-C-GGCUu------CGACGgCGGGGg -5' |
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254 | 3' | -63.6 | AC_000008.1 | + | 17278 | 0.68 | 0.138384 |
Target: 5'- -uGCAgGCGGUCGcuGCgGCCGCgUCCa -3' miRNA: 3'- uuCGU-CGCCGGCuuCGaCGGCGgGGG- -5' |
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254 | 3' | -63.6 | AC_000008.1 | + | 10006 | 0.71 | 0.090998 |
Target: 5'- cGGCGGCGGCgGAguuuggccguAGgUGgCGCCCUCu -3' miRNA: 3'- uUCGUCGCCGgCU----------UCgACgGCGGGGG- -5' |
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254 | 3' | -63.6 | AC_000008.1 | + | 33211 | 0.72 | 0.07043 |
Target: 5'- cAGCAGC-GCgCGAAuaaacuGCUGCCGCCgCCg -3' miRNA: 3'- uUCGUCGcCG-GCUU------CGACGGCGGgGG- -5' |
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254 | 3' | -63.6 | AC_000008.1 | + | 9170 | 0.69 | 0.117183 |
Target: 5'- uGGCcGCuGCUGuuGCUGCCGCUgCCg -3' miRNA: 3'- uUCGuCGcCGGCuuCGACGGCGGgGG- -5' |
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254 | 3' | -63.6 | AC_000008.1 | + | 19812 | 0.68 | 0.150258 |
Target: 5'- uGGUGGCGGCgUGGgcguguAGUUGCgCGCCUCCu -3' miRNA: 3'- uUCGUCGCCG-GCU------UCGACG-GCGGGGG- -5' |
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254 | 3' | -63.6 | AC_000008.1 | + | 22934 | 0.67 | 0.158682 |
Target: 5'- -cGC-GCGGUCGccuguGGgaGCCGCaCCCCc -3' miRNA: 3'- uuCGuCGCCGGCu----UCgaCGGCG-GGGG- -5' |
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254 | 3' | -63.6 | AC_000008.1 | + | 9696 | 0.66 | 0.18656 |
Target: 5'- uGGGUGGCGGCgGcAGCUGCaGCUUCUu -3' miRNA: 3'- -UUCGUCGCCGgCuUCGACGgCGGGGG- -5' |
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254 | 3' | -63.6 | AC_000008.1 | + | 27243 | 0.66 | 0.18656 |
Target: 5'- -cGCGGC-GCCGAcG-UGCCccuGCCCCCu -3' miRNA: 3'- uuCGUCGcCGGCUuCgACGG---CGGGGG- -5' |
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254 | 3' | -63.6 | AC_000008.1 | + | 23301 | 0.66 | 0.20206 |
Target: 5'- gAAGCAGCGcGUCGuAGaccagGCCGgCCUCg -3' miRNA: 3'- -UUCGUCGC-CGGCuUCga---CGGCgGGGG- -5' |
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254 | 3' | -63.6 | AC_000008.1 | + | 32102 | 0.83 | 0.009938 |
Target: 5'- gAAGCGGCGGCgGAGGCUGCaGUCUCCa -3' miRNA: 3'- -UUCGUCGCCGgCUUCGACGgCGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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