miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25442 3' -58.5 NC_005336.1 + 116460 0.65 0.784779
Target:  5'- cGAGCUcgaugugccgcucgGGCGUggUGUacACGGCGCCGagCAGg -3'
miRNA:   3'- -CUCGG--------------CCGCG--ACA--UGUCGCGGUa-GUC- -5'
25442 3' -58.5 NC_005336.1 + 134312 0.66 0.778303
Target:  5'- -cGCgUGGCGCUGgugaACAGCgGCCAcgCGGc -3'
miRNA:   3'- cuCG-GCCGCGACa---UGUCG-CGGUa-GUC- -5'
25442 3' -58.5 NC_005336.1 + 39366 0.66 0.775507
Target:  5'- uGGCCGGCggcaccgcgagcacGCgcGUGCGGCGCCgcccGUCGu -3'
miRNA:   3'- cUCGGCCG--------------CGa-CAUGUCGCGG----UAGUc -5'
25442 3' -58.5 NC_005336.1 + 88423 0.66 0.76894
Target:  5'- aAGCCuacGGCGCggccuCGGCGCCggCGGa -3'
miRNA:   3'- cUCGG---CCGCGacau-GUCGCGGuaGUC- -5'
25442 3' -58.5 NC_005336.1 + 71184 0.66 0.76894
Target:  5'- -cGCgGGCGC-GUucGCGGgcguCGCCAUCAGc -3'
miRNA:   3'- cuCGgCCGCGaCA--UGUC----GCGGUAGUC- -5'
25442 3' -58.5 NC_005336.1 + 67343 0.66 0.76894
Target:  5'- aGAGCCGGCGCacgGUGaGGUaGUCGUCc- -3'
miRNA:   3'- -CUCGGCCGCGa--CAUgUCG-CGGUAGuc -5'
25442 3' -58.5 NC_005336.1 + 26878 0.66 0.76894
Target:  5'- cGAGCaGGCGCuUGgccacgcgcaGCAGCGUCAccUCGGg -3'
miRNA:   3'- -CUCGgCCGCG-ACa---------UGUCGCGGU--AGUC- -5'
25442 3' -58.5 NC_005336.1 + 68388 0.66 0.76894
Target:  5'- cGGCC-GCGCUGUucGCGGCGCUg---- -3'
miRNA:   3'- cUCGGcCGCGACA--UGUCGCGGuaguc -5'
25442 3' -58.5 NC_005336.1 + 18726 0.66 0.767997
Target:  5'- -cGCCGGUcgcgcucguccauGCUGUugGcGCGUCGUCGc -3'
miRNA:   3'- cuCGGCCG-------------CGACAugU-CGCGGUAGUc -5'
25442 3' -58.5 NC_005336.1 + 51682 0.66 0.767997
Target:  5'- aGGGCCGggugccggcgcucGCGCUGgacggGCGGC-CCGUCGc -3'
miRNA:   3'- -CUCGGC-------------CGCGACa----UGUCGcGGUAGUc -5'
25442 3' -58.5 NC_005336.1 + 95716 0.66 0.759455
Target:  5'- cAGCaC-GCGCUGgGCGGCGCCGcgCGGu -3'
miRNA:   3'- cUCG-GcCGCGACaUGUCGCGGUa-GUC- -5'
25442 3' -58.5 NC_005336.1 + 11767 0.66 0.749858
Target:  5'- -cGCCGcGCaGCgc--CAGCGCCAUCAc -3'
miRNA:   3'- cuCGGC-CG-CGacauGUCGCGGUAGUc -5'
25442 3' -58.5 NC_005336.1 + 125382 0.66 0.740157
Target:  5'- -cGCUGGCGgaGauuugccGCGGCGCCA-CAGu -3'
miRNA:   3'- cuCGGCCGCgaCa------UGUCGCGGUaGUC- -5'
25442 3' -58.5 NC_005336.1 + 114322 0.66 0.740157
Target:  5'- cGGCUGuCGCUGgcgGCGGCGCCGg--- -3'
miRNA:   3'- cUCGGCcGCGACa--UGUCGCGGUaguc -5'
25442 3' -58.5 NC_005336.1 + 106305 0.66 0.740157
Target:  5'- -cGCCGGCGCUucaUGC-GCaGCCcgCAGa -3'
miRNA:   3'- cuCGGCCGCGAc--AUGuCG-CGGuaGUC- -5'
25442 3' -58.5 NC_005336.1 + 36757 0.66 0.740157
Target:  5'- -uGCgGGUGC-GUGCGGaagcuGCCGUCGGa -3'
miRNA:   3'- cuCGgCCGCGaCAUGUCg----CGGUAGUC- -5'
25442 3' -58.5 NC_005336.1 + 10137 0.66 0.740157
Target:  5'- gGAGUCGGCGCUcgcgGCGGUGUgcaCGUCGu -3'
miRNA:   3'- -CUCGGCCGCGAca--UGUCGCG---GUAGUc -5'
25442 3' -58.5 NC_005336.1 + 63569 0.67 0.730361
Target:  5'- -cGCCGGUGgUGaACAGCGUCAa--- -3'
miRNA:   3'- cuCGGCCGCgACaUGUCGCGGUaguc -5'
25442 3' -58.5 NC_005336.1 + 54177 0.67 0.730361
Target:  5'- cGGCCcgGGCGCgGUcgGCGGCGCCGcgCGa -3'
miRNA:   3'- cUCGG--CCGCGaCA--UGUCGCGGUa-GUc -5'
25442 3' -58.5 NC_005336.1 + 111404 0.67 0.72048
Target:  5'- gGAGCCGGagcCGCcg-ACgAGCGCCAUCc- -3'
miRNA:   3'- -CUCGGCC---GCGacaUG-UCGCGGUAGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.