miRNA display CGI


Results 1 - 20 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25442 5' -56.6 NC_005336.1 + 127115 0.66 0.876769
Target:  5'- -gCUCGCcGCGG-----GCGCGGACg -3'
miRNA:   3'- uaGAGCGuCGCCacauuCGCGCCUGg -5'
25442 5' -56.6 NC_005336.1 + 82714 0.66 0.872398
Target:  5'- uUCUCGCAGagcaccu-GCGCGGACa -3'
miRNA:   3'- uAGAGCGUCgccacauuCGCGCCUGg -5'
25442 5' -56.6 NC_005336.1 + 30702 0.66 0.86944
Target:  5'- ---gCGCGGCGGUGgcGGCcuCGGAg- -3'
miRNA:   3'- uagaGCGUCGCCACauUCGc-GCCUgg -5'
25442 5' -56.6 NC_005336.1 + 91216 0.66 0.867199
Target:  5'- cGUCUCGaaguccuugaCGGCGGUGUucaccGuggucuggauguugAGCGCGG-CCg -3'
miRNA:   3'- -UAGAGC----------GUCGCCACA-----U--------------UCGCGCCuGG- -5'
25442 5' -56.6 NC_005336.1 + 67399 0.66 0.861896
Target:  5'- cGUCUCGCGGCug---GAGaCGCGGcCCu -3'
miRNA:   3'- -UAGAGCGUCGccacaUUC-GCGCCuGG- -5'
25442 5' -56.6 NC_005336.1 + 101091 0.66 0.859591
Target:  5'- uUCUCGgGGCGGcgcucggacgacUuccugagcaccaccGUGcGCGCGGACCc -3'
miRNA:   3'- uAGAGCgUCGCC------------A--------------CAUuCGCGCCUGG- -5'
25442 5' -56.6 NC_005336.1 + 114713 0.66 0.854142
Target:  5'- cUCUCuGCAGCGGaccuccccGUcAGGCGcCGGAgCCa -3'
miRNA:   3'- uAGAG-CGUCGCCa-------CA-UUCGC-GCCU-GG- -5'
25442 5' -56.6 NC_005336.1 + 120587 0.66 0.854142
Target:  5'- -gCUCGCGGCGGcGac-GCcgGCGGACg -3'
miRNA:   3'- uaGAGCGUCGCCaCauuCG--CGCCUGg -5'
25442 5' -56.6 NC_005336.1 + 101723 0.66 0.846185
Target:  5'- -gCUCGCGGCcgcggacGUGgccaccgcGAGCGUGGACUu -3'
miRNA:   3'- uaGAGCGUCGc------CACa-------UUCGCGCCUGG- -5'
25442 5' -56.6 NC_005336.1 + 29122 0.66 0.846185
Target:  5'- cUCUaugGCGGCGGUGgccGCGCucgaGGGCUc -3'
miRNA:   3'- uAGAg--CGUCGCCACauuCGCG----CCUGG- -5'
25442 5' -56.6 NC_005336.1 + 47027 0.66 0.846185
Target:  5'- --gUCGCggagaaggaGGCGGUGgugcGGCGCGcGCCg -3'
miRNA:   3'- uagAGCG---------UCGCCACau--UCGCGCcUGG- -5'
25442 5' -56.6 NC_005336.1 + 69758 0.66 0.846185
Target:  5'- cUCUgGUGGCGGcg-AAGCGCccgcugcuGGACCu -3'
miRNA:   3'- uAGAgCGUCGCCacaUUCGCG--------CCUGG- -5'
25442 5' -56.6 NC_005336.1 + 127841 0.66 0.838031
Target:  5'- ---gCGCGGCuGcUGgccgcGGGCGCGGACCc -3'
miRNA:   3'- uagaGCGUCGcC-ACa----UUCGCGCCUGG- -5'
25442 5' -56.6 NC_005336.1 + 109741 0.66 0.838031
Target:  5'- ---gCGCGaucGCGGUGUAgGGCGCGuACCc -3'
miRNA:   3'- uagaGCGU---CGCCACAU-UCGCGCcUGG- -5'
25442 5' -56.6 NC_005336.1 + 83279 0.66 0.838031
Target:  5'- gGUCUCGCAGaCGaUGUc--CGUGGACUg -3'
miRNA:   3'- -UAGAGCGUC-GCcACAuucGCGCCUGG- -5'
25442 5' -56.6 NC_005336.1 + 94526 0.67 0.829687
Target:  5'- ----aGCAGCGGcUGcaaguGGCGCGGcCCg -3'
miRNA:   3'- uagagCGUCGCC-ACau---UCGCGCCuGG- -5'
25442 5' -56.6 NC_005336.1 + 9430 0.67 0.827149
Target:  5'- cUCgCGCAGCGG-GUAcgccagucggaagcAGCGCGcGuCCg -3'
miRNA:   3'- uAGaGCGUCGCCaCAU--------------UCGCGC-CuGG- -5'
25442 5' -56.6 NC_005336.1 + 92199 0.67 0.821163
Target:  5'- --gUCGCA--GGUGUGcAGCGCGGcGCCc -3'
miRNA:   3'- uagAGCGUcgCCACAU-UCGCGCC-UGG- -5'
25442 5' -56.6 NC_005336.1 + 60898 0.67 0.821163
Target:  5'- cGUCggccuagcgCGCGGCGGcGUGcGCaUGGACCg -3'
miRNA:   3'- -UAGa--------GCGUCGCCaCAUuCGcGCCUGG- -5'
25442 5' -56.6 NC_005336.1 + 94256 0.67 0.821163
Target:  5'- aGUCcCGCGGCgaGGUGcucgacGGCGCGGuguCCa -3'
miRNA:   3'- -UAGaGCGUCG--CCACau----UCGCGCCu--GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.