miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25449 5' -60.1 NC_005336.1 + 52880 0.66 0.71754
Target:  5'- gCCgUUCGCgccgccuUCUCCGCGGAGAuGCGg -3'
miRNA:   3'- -GG-GAGCGacu----AGGGGCGCCUCU-CGUu -5'
25449 5' -60.1 NC_005336.1 + 38203 0.66 0.707743
Target:  5'- gCCCUUGaaGAacuugaucuugcUCUCCGCGGGGAucaGCGAg -3'
miRNA:   3'- -GGGAGCgaCU------------AGGGGCGCCUCU---CGUU- -5'
25449 5' -60.1 NC_005336.1 + 62598 0.66 0.707743
Target:  5'- gCgCUCGCUGGa-CCCGCGGcugcuGGGCGc -3'
miRNA:   3'- -GgGAGCGACUagGGGCGCCu----CUCGUu -5'
25449 5' -60.1 NC_005336.1 + 85749 0.66 0.697884
Target:  5'- gCUC-CGCUGG-CUCCGCGGAcGuGCGAu -3'
miRNA:   3'- -GGGaGCGACUaGGGGCGCCU-CuCGUU- -5'
25449 5' -60.1 NC_005336.1 + 13825 0.66 0.697884
Target:  5'- cUCCUCGCgcgGcaggCgCCCGauguaGGAGAGCAGc -3'
miRNA:   3'- -GGGAGCGa--Cua--G-GGGCg----CCUCUCGUU- -5'
25449 5' -60.1 NC_005336.1 + 98565 0.66 0.687973
Target:  5'- cCCCUCGgUGGUaguguUCCUGCGccAGAGCAAc -3'
miRNA:   3'- -GGGAGCgACUA-----GGGGCGCc-UCUCGUU- -5'
25449 5' -60.1 NC_005336.1 + 41885 0.66 0.678016
Target:  5'- aCCgCGCUGcccugcggcgcGUCCggCCGCGGAaGAGCAc -3'
miRNA:   3'- gGGaGCGAC-----------UAGG--GGCGCCU-CUCGUu -5'
25449 5' -60.1 NC_005336.1 + 90122 0.67 0.668023
Target:  5'- ---cUGCUGAUgCCCGCGGGGucGCGc -3'
miRNA:   3'- gggaGCGACUAgGGGCGCCUCu-CGUu -5'
25449 5' -60.1 NC_005336.1 + 25269 0.67 0.668023
Target:  5'- aCCCUCGCUGucgcuGUCCCaGCGacuAGGGCc- -3'
miRNA:   3'- -GGGAGCGAC-----UAGGGgCGCc--UCUCGuu -5'
25449 5' -60.1 NC_005336.1 + 130079 0.67 0.64796
Target:  5'- gCCCgaagaCG-UGGUCUCCGCGGAcgaGAGCGc -3'
miRNA:   3'- -GGGa----GCgACUAGGGGCGCCU---CUCGUu -5'
25449 5' -60.1 NC_005336.1 + 33280 0.68 0.597724
Target:  5'- gCgCUUGCUGcagcgGUCCaggcuCGCGGAGAGCGc -3'
miRNA:   3'- -GgGAGCGAC-----UAGGg----GCGCCUCUCGUu -5'
25449 5' -60.1 NC_005336.1 + 44861 0.68 0.567818
Target:  5'- cCCCU-GCcGGUCCCgGCGGAG-GCc- -3'
miRNA:   3'- -GGGAgCGaCUAGGGgCGCCUCuCGuu -5'
25449 5' -60.1 NC_005336.1 + 123445 0.68 0.567818
Target:  5'- uUCCUgcUGCUGAcgcgccaccCCgCCGCGGAGGGCGc -3'
miRNA:   3'- -GGGA--GCGACUa--------GG-GGCGCCUCUCGUu -5'
25449 5' -60.1 NC_005336.1 + 78540 0.68 0.557929
Target:  5'- uUCCUCGUcucguucaUGG-CCUCGCGGAGcGCGAa -3'
miRNA:   3'- -GGGAGCG--------ACUaGGGGCGCCUCuCGUU- -5'
25449 5' -60.1 NC_005336.1 + 99597 0.69 0.538303
Target:  5'- gCCCggUGCUGAUCUCCGCGcgcGGCGAc -3'
miRNA:   3'- -GGGa-GCGACUAGGGGCGCcucUCGUU- -5'
25449 5' -60.1 NC_005336.1 + 94265 0.69 0.538303
Target:  5'- gUCCUCGaacgagGAUgCgCCCGgGGGGAGCAGg -3'
miRNA:   3'- -GGGAGCga----CUA-G-GGGCgCCUCUCGUU- -5'
25449 5' -60.1 NC_005336.1 + 87385 0.69 0.528579
Target:  5'- aCUUCGCgaggaUGAUCgagaugcgcuugUCCGUGGAGAGCAGu -3'
miRNA:   3'- gGGAGCG-----ACUAG------------GGGCGCCUCUCGUU- -5'
25449 5' -60.1 NC_005336.1 + 100506 0.69 0.509332
Target:  5'- uUCCUCGCg----CUCGCGGAGAGCu- -3'
miRNA:   3'- -GGGAGCGacuagGGGCGCCUCUCGuu -5'
25449 5' -60.1 NC_005336.1 + 121422 0.69 0.509332
Target:  5'- gCCCUCGCgagugcgagGAUCCCga-GGAGGGCu- -3'
miRNA:   3'- -GGGAGCGa--------CUAGGGgcgCCUCUCGuu -5'
25449 5' -60.1 NC_005336.1 + 82920 0.7 0.448126
Target:  5'- aUCacgCGCUGGaucaugugguacaggUCCCgCGCGGAGAGCGc -3'
miRNA:   3'- -GGga-GCGACU---------------AGGG-GCGCCUCUCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.