miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25464 3' -60.9 NC_005336.1 + 129193 0.66 0.712109
Target:  5'- gCGCgCGCCGCCGCggucguccUCCCCuCGCuCAAg- -3'
miRNA:   3'- -GUGgGUGGCGGUG--------AGGGG-GUG-GUUgc -5'
25464 3' -60.9 NC_005336.1 + 126101 0.66 0.712109
Target:  5'- gUACCCGCCgaugGCCucgCCCgCGCuCAACGa -3'
miRNA:   3'- -GUGGGUGG----CGGugaGGGgGUG-GUUGC- -5'
25464 3' -60.9 NC_005336.1 + 11895 0.66 0.712109
Target:  5'- uGCCCugCGCCAgggaCgCCACCucuGCGg -3'
miRNA:   3'- gUGGGugGCGGUgag-GgGGUGGu--UGC- -5'
25464 3' -60.9 NC_005336.1 + 6068 0.66 0.712109
Target:  5'- uCGCgUAguCCGCCagcGCUCgCUCCGCCAGCa -3'
miRNA:   3'- -GUGgGU--GGCGG---UGAG-GGGGUGGUUGc -5'
25464 3' -60.9 NC_005336.1 + 7346 0.66 0.702405
Target:  5'- gCugCCGCggcaGCCGCgggcgugcgaggUCgCCCGCCGGCGc -3'
miRNA:   3'- -GugGGUGg---CGGUG------------AGgGGGUGGUUGC- -5'
25464 3' -60.9 NC_005336.1 + 71529 0.66 0.702405
Target:  5'- gGCUCAUCGCgCGCgCCCCaggccaggACCAGCGc -3'
miRNA:   3'- gUGGGUGGCG-GUGaGGGGg-------UGGUUGC- -5'
25464 3' -60.9 NC_005336.1 + 23991 0.66 0.699482
Target:  5'- gCGCgCACCGCgGCUCUacgaggacccggugCCCGCgAACa -3'
miRNA:   3'- -GUGgGUGGCGgUGAGG--------------GGGUGgUUGc -5'
25464 3' -60.9 NC_005336.1 + 129996 0.66 0.699482
Target:  5'- aCACgCCGCUGCacgaggccgcaaaaCACUCCUCCugCAAa- -3'
miRNA:   3'- -GUG-GGUGGCG--------------GUGAGGGGGugGUUgc -5'
25464 3' -60.9 NC_005336.1 + 39862 0.66 0.692645
Target:  5'- gCGCCCuCCGCaCGCagCCgCCgCAUCAGCGc -3'
miRNA:   3'- -GUGGGuGGCG-GUGa-GG-GG-GUGGUUGC- -5'
25464 3' -60.9 NC_005336.1 + 97236 0.66 0.692645
Target:  5'- cCACCuCAUCGCCACgcacggCCgCCGCgCggUGg -3'
miRNA:   3'- -GUGG-GUGGCGGUGa-----GGgGGUG-GuuGC- -5'
25464 3' -60.9 NC_005336.1 + 124793 0.66 0.692645
Target:  5'- cCGCCCGCgCGCCGCgcgagCCCgaggcCCGGCGc -3'
miRNA:   3'- -GUGGGUG-GCGGUGa----GGGggu--GGUUGC- -5'
25464 3' -60.9 NC_005336.1 + 121096 0.66 0.691667
Target:  5'- gCGCCggCACCGCCACcgcgagaUCCCCgacaGCuCGGCGu -3'
miRNA:   3'- -GUGG--GUGGCGGUG-------AGGGGg---UG-GUUGC- -5'
25464 3' -60.9 NC_005336.1 + 129948 0.66 0.682838
Target:  5'- aGCUCAuCCGCCACggcugCUCgCCGCgAGCGc -3'
miRNA:   3'- gUGGGU-GGCGGUGa----GGG-GGUGgUUGC- -5'
25464 3' -60.9 NC_005336.1 + 14407 0.66 0.681855
Target:  5'- gCACCacuguggCGCCGCgGCaaaUCUCCGCCAGCGu -3'
miRNA:   3'- -GUGG-------GUGGCGgUGa--GGGGGUGGUUGC- -5'
25464 3' -60.9 NC_005336.1 + 101869 0.66 0.678904
Target:  5'- cCGCCCGCU-CCACUUCCaguaugaguccuaCGCCAACu -3'
miRNA:   3'- -GUGGGUGGcGGUGAGGGg------------GUGGUUGc -5'
25464 3' -60.9 NC_005336.1 + 93734 0.66 0.676934
Target:  5'- aCACCCACCgugcgcgucacgcugGCCACgCUCgUgGCCAGCGu -3'
miRNA:   3'- -GUGGGUGG---------------CGGUGaGGG-GgUGGUUGC- -5'
25464 3' -60.9 NC_005336.1 + 38777 0.66 0.672991
Target:  5'- aCGCUgACCGCCA-UCCgCCGCUAcgacACGg -3'
miRNA:   3'- -GUGGgUGGCGGUgAGGgGGUGGU----UGC- -5'
25464 3' -60.9 NC_005336.1 + 130110 0.66 0.672991
Target:  5'- gCGgCCGCCGCCGaggaggCCgCCGCCG-CGg -3'
miRNA:   3'- -GUgGGUGGCGGUga----GGgGGUGGUuGC- -5'
25464 3' -60.9 NC_005336.1 + 98229 0.66 0.672991
Target:  5'- gGCUUcguCCGCgagCGCUCCgCCGCCGGCGc -3'
miRNA:   3'- gUGGGu--GGCG---GUGAGGgGGUGGUUGC- -5'
25464 3' -60.9 NC_005336.1 + 105292 0.66 0.672991
Target:  5'- aACCCGCCGCCGCgaCUgCGucUCGACGa -3'
miRNA:   3'- gUGGGUGGCGGUGagGGgGU--GGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.