miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25468 3' -46.7 NC_005336.1 + 231 0.66 0.999854
Target:  5'- --gUCGGGUGGucGGGUGgcaguGCCGUCc -3'
miRNA:   3'- aaaAGCCCAUUu-UUCGCaug--UGGCAG- -5'
25468 3' -46.7 NC_005336.1 + 231 0.66 0.999854
Target:  5'- --gUCGGGUGGucGGGUGgcaguGCCGUCc -3'
miRNA:   3'- aaaAGCCCAUUu-UUCGCaug--UGGCAG- -5'
25468 3' -46.7 NC_005336.1 + 81006 0.66 0.999854
Target:  5'- ----aGGGUc--AGGcCGUugGCCGUCa -3'
miRNA:   3'- aaaagCCCAuuuUUC-GCAugUGGCAG- -5'
25468 3' -46.7 NC_005336.1 + 131264 0.66 0.99981
Target:  5'- ---cCGGGc----GGCGUGCGCCG-Ca -3'
miRNA:   3'- aaaaGCCCauuuuUCGCAUGUGGCaG- -5'
25468 3' -46.7 NC_005336.1 + 43580 0.66 0.999805
Target:  5'- ---gCGGcGUAAAuAGCGUcuucaaaugggggACACCGUa -3'
miRNA:   3'- aaaaGCC-CAUUUuUCGCA-------------UGUGGCAg -5'
25468 3' -46.7 NC_005336.1 + 118276 0.66 0.999686
Target:  5'- ---gCGGGgAAGAGGCcgACGCCGUg -3'
miRNA:   3'- aaaaGCCCaUUUUUCGcaUGUGGCAg -5'
25468 3' -46.7 NC_005336.1 + 7736 0.67 0.999601
Target:  5'- -cUUCGGGagucuGGGCGaACACCG-Cg -3'
miRNA:   3'- aaAAGCCCauuu-UUCGCaUGUGGCaG- -5'
25468 3' -46.7 NC_005336.1 + 120581 0.67 0.999448
Target:  5'- --cUCGGGgcucgcGGCGgcgacgccggcggACGCCGUCg -3'
miRNA:   3'- aaaAGCCCauuuu-UCGCa------------UGUGGCAG- -5'
25468 3' -46.7 NC_005336.1 + 76497 0.68 0.998228
Target:  5'- --cUCGGGcgcGAAGCGcauCAUCGUCg -3'
miRNA:   3'- aaaAGCCCauuUUUCGCau-GUGGCAG- -5'
25468 3' -46.7 NC_005336.1 + 131773 0.68 0.997861
Target:  5'- ---aCGcGGcGAAAGGCGUGCAagaUCGUCa -3'
miRNA:   3'- aaaaGC-CCaUUUUUCGCAUGU---GGCAG- -5'
25468 3' -46.7 NC_005336.1 + 37856 0.69 0.996933
Target:  5'- -gUUCuugaaGGUGAGcAGCGUGCGCCG-Ca -3'
miRNA:   3'- aaAAGc----CCAUUUuUCGCAUGUGGCaG- -5'
25468 3' -46.7 NC_005336.1 + 100295 0.69 0.996933
Target:  5'- ---cUGGGaGAAgcGCGUGCACCG-Cg -3'
miRNA:   3'- aaaaGCCCaUUUuuCGCAUGUGGCaG- -5'
25468 3' -46.7 NC_005336.1 + 61090 0.7 0.989386
Target:  5'- --aUCGGGcaugauGGAGGUGUACACC-UCg -3'
miRNA:   3'- aaaAGCCCau----UUUUCGCAUGUGGcAG- -5'
25468 3' -46.7 NC_005336.1 + 91936 0.71 0.98785
Target:  5'- ---gCGGGUGAAGGGCG-GCAC-GUCc -3'
miRNA:   3'- aaaaGCCCAUUUUUCGCaUGUGgCAG- -5'
25468 3' -46.7 NC_005336.1 + 22444 0.72 0.971855
Target:  5'- ----aGGGcgugaAAAAAGCGUACACCGcCg -3'
miRNA:   3'- aaaagCCCa----UUUUUCGCAUGUGGCaG- -5'
25468 3' -46.7 NC_005336.1 + 131705 0.78 0.774131
Target:  5'- --cUCGGGUuuGAAGUGUuucCGCCGUCc -3'
miRNA:   3'- aaaAGCCCAuuUUUCGCAu--GUGGCAG- -5'
25468 3' -46.7 NC_005336.1 + 117318 1.09 0.018519
Target:  5'- uUUUUCGGGUAAAAAGCGUACACCGUCg -3'
miRNA:   3'- -AAAAGCCCAUUUUUCGCAUGUGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.