miRNA display CGI


Results 1 - 20 of 212 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25468 5' -49.9 NC_005336.1 + 93915 0.65 0.997675
Target:  5'- cGCGGCGGguagACGaCgaacuagccuccagCGCGCCg -3'
miRNA:   3'- -CGCCGCCaca-UGC-Gaaaaaa--------GUGCGG- -5'
25468 5' -49.9 NC_005336.1 + 75096 0.66 0.997507
Target:  5'- cGCGcGCGGgcccGcGCGCguccgccgggCGCGCCa -3'
miRNA:   3'- -CGC-CGCCa---CaUGCGaaaaaa----GUGCGG- -5'
25468 5' -49.9 NC_005336.1 + 53683 0.66 0.997463
Target:  5'- cGCuGCGcGUgGUGCGCUUccu--GCGCCg -3'
miRNA:   3'- -CGcCGC-CA-CAUGCGAAaaaagUGCGG- -5'
25468 5' -49.9 NC_005336.1 + 35186 0.66 0.997463
Target:  5'- uGCGGCGauuuuaaaguacGUGUACaCUUucagUUUUguCGCCg -3'
miRNA:   3'- -CGCCGC------------CACAUGcGAA----AAAAguGCGG- -5'
25468 5' -49.9 NC_005336.1 + 85243 0.66 0.997463
Target:  5'- cGCGGUGGUuggccacGUAcCGCaccagcgucuggaugUUcUUCACGCCc -3'
miRNA:   3'- -CGCCGCCA-------CAU-GCGa--------------AAaAAGUGCGG- -5'
25468 5' -49.9 NC_005336.1 + 87085 0.66 0.997463
Target:  5'- cGCGGUGGUGg--GCUcggugucCACGCg -3'
miRNA:   3'- -CGCCGCCACaugCGAaaaaa--GUGCGg -5'
25468 5' -49.9 NC_005336.1 + 100104 0.66 0.997463
Target:  5'- cGCGGCGGcgagGCGCccgc--CGCGCa -3'
miRNA:   3'- -CGCCGCCaca-UGCGaaaaaaGUGCGg -5'
25468 5' -49.9 NC_005336.1 + 93627 0.66 0.997463
Target:  5'- cGCGGCuGcGUcgGCGCUUcgugCACGCg -3'
miRNA:   3'- -CGCCGcCaCA--UGCGAAaaaaGUGCGg -5'
25468 5' -49.9 NC_005336.1 + 87951 0.66 0.997463
Target:  5'- gGCGGCGGacUGcacgGCGCcga----GCGCCu -3'
miRNA:   3'- -CGCCGCC--ACa---UGCGaaaaaagUGCGG- -5'
25468 5' -49.9 NC_005336.1 + 30393 0.66 0.997463
Target:  5'- -aGGCGGccuucGCGCggcug-CGCGCCg -3'
miRNA:   3'- cgCCGCCaca--UGCGaaaaaaGUGCGG- -5'
25468 5' -49.9 NC_005336.1 + 88975 0.66 0.997236
Target:  5'- uCGGCGGauguUGUACGCgguggugaacacgGCGCCc -3'
miRNA:   3'- cGCCGCC----ACAUGCGaaaaaag------UGCGG- -5'
25468 5' -49.9 NC_005336.1 + 71385 0.66 0.997188
Target:  5'- cGCaGCGGgg-GCGCgagcgcgggCGCGCCc -3'
miRNA:   3'- -CGcCGCCacaUGCGaaaaaa---GUGCGG- -5'
25468 5' -49.9 NC_005336.1 + 110032 0.66 0.997042
Target:  5'- cGCaGGCGGUGcgcgagggcgcgaugGCGCUcugcgUGCGCCc -3'
miRNA:   3'- -CG-CCGCCACa--------------UGCGAaaaaaGUGCGG- -5'
25468 5' -49.9 NC_005336.1 + 98583 0.66 0.996992
Target:  5'- aCGuCGGcGUACGCg---UUCGCGCa -3'
miRNA:   3'- cGCcGCCaCAUGCGaaaaAAGUGCGg -5'
25468 5' -49.9 NC_005336.1 + 43089 0.66 0.996992
Target:  5'- cGCGGuCGGUG-ACGCg----UCGgagGCCa -3'
miRNA:   3'- -CGCC-GCCACaUGCGaaaaaAGUg--CGG- -5'
25468 5' -49.9 NC_005336.1 + 21145 0.66 0.996784
Target:  5'- uGCGGCGGaaGUACaugaua--CACGCCa -3'
miRNA:   3'- -CGCCGCCa-CAUGcgaaaaaaGUGCGG- -5'
25468 5' -49.9 NC_005336.1 + 99771 0.66 0.99645
Target:  5'- uGCGGCugcuGGUGcgcCGCUUcgggCGCGCUu -3'
miRNA:   3'- -CGCCG----CCACau-GCGAAaaaaGUGCGG- -5'
25468 5' -49.9 NC_005336.1 + 68714 0.66 0.99645
Target:  5'- cGCuGGUGGacgaGUACGacgcggUCGCGCCc -3'
miRNA:   3'- -CG-CCGCCa---CAUGCgaaaaaAGUGCGG- -5'
25468 5' -49.9 NC_005336.1 + 18198 0.66 0.99645
Target:  5'- aCGGCGcUGUccGCGCggUUUaCGCGCa -3'
miRNA:   3'- cGCCGCcACA--UGCGaaAAAaGUGCGg -5'
25468 5' -49.9 NC_005336.1 + 75989 0.66 0.99645
Target:  5'- cGCGGCGGUaggccucgGUcUGCUUcgcggUCAUGUCc -3'
miRNA:   3'- -CGCCGCCA--------CAuGCGAAaaa--AGUGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.