miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25468 5' -49.9 NC_005336.1 + 93915 0.65 0.997675
Target:  5'- cGCGGCGGguagACGaCgaacuagccuccagCGCGCCg -3'
miRNA:   3'- -CGCCGCCaca-UGC-Gaaaaaa--------GUGCGG- -5'
25468 5' -49.9 NC_005336.1 + 19682 0.66 0.99645
Target:  5'- cGCcGCGGgagGUGC-CUggggugCACGCCg -3'
miRNA:   3'- -CGcCGCCa--CAUGcGAaaaaa-GUGCGG- -5'
25468 5' -49.9 NC_005336.1 + 42216 0.66 0.995697
Target:  5'- cGCGGCGGUacccGCGCaccgcggC-CGCCg -3'
miRNA:   3'- -CGCCGCCAca--UGCGaaaaaa-GuGCGG- -5'
25468 5' -49.9 NC_005336.1 + 39681 0.66 0.995897
Target:  5'- cGCGaaGGUGUACGUgcgcggcggGCGCCu -3'
miRNA:   3'- -CGCcgCCACAUGCGaaaaaag--UGCGG- -5'
25468 5' -49.9 NC_005336.1 + 68714 0.66 0.99645
Target:  5'- cGCuGGUGGacgaGUACGacgcggUCGCGCCc -3'
miRNA:   3'- -CG-CCGCCa---CAUGCgaaaaaAGUGCGG- -5'
25468 5' -49.9 NC_005336.1 + 74474 0.66 0.995697
Target:  5'- cGCGGCGcGUGcugcuCGCgaccaagCACGCg -3'
miRNA:   3'- -CGCCGC-CACau---GCGaaaaaa-GUGCGg -5'
25468 5' -49.9 NC_005336.1 + 75989 0.66 0.99645
Target:  5'- cGCGGCGGUaggccucgGUcUGCUUcgcggUCAUGUCc -3'
miRNA:   3'- -CGCCGCCA--------CAuGCGAAaaa--AGUGCGG- -5'
25468 5' -49.9 NC_005336.1 + 98583 0.66 0.996992
Target:  5'- aCGuCGGcGUACGCg---UUCGCGCa -3'
miRNA:   3'- cGCcGCCaCAUGCGaaaaAAGUGCGg -5'
25468 5' -49.9 NC_005336.1 + 72416 0.66 0.995126
Target:  5'- cGCGcGUGGUcUACuGCcgcaugUCGCGCCg -3'
miRNA:   3'- -CGC-CGCCAcAUG-CGaaaaa-AGUGCGG- -5'
25468 5' -49.9 NC_005336.1 + 18198 0.66 0.99645
Target:  5'- aCGGCGcUGUccGCGCggUUUaCGCGCa -3'
miRNA:   3'- cGCCGCcACA--UGCGaaAAAaGUGCGg -5'
25468 5' -49.9 NC_005336.1 + 128136 0.66 0.995697
Target:  5'- uGCGGCGc---ACGCgccugggCGCGCCg -3'
miRNA:   3'- -CGCCGCcacaUGCGaaaaaa-GUGCGG- -5'
25468 5' -49.9 NC_005336.1 + 21145 0.66 0.996784
Target:  5'- uGCGGCGGaaGUACaugaua--CACGCCa -3'
miRNA:   3'- -CGCCGCCa-CAUGcgaaaaaaGUGCGG- -5'
25468 5' -49.9 NC_005336.1 + 26183 0.66 0.99645
Target:  5'- cGCGGCGGcc-GCGauCUUggucucCACGCCg -3'
miRNA:   3'- -CGCCGCCacaUGC--GAAaaaa--GUGCGG- -5'
25468 5' -49.9 NC_005336.1 + 123295 0.66 0.995831
Target:  5'- cGCGGaGGUGgACGUagagUUCAUGCg -3'
miRNA:   3'- -CGCCgCCACaUGCGaaaaAAGUGCGg -5'
25468 5' -49.9 NC_005336.1 + 99771 0.66 0.99645
Target:  5'- uGCGGCugcuGGUGcgcCGCUUcgggCGCGCUu -3'
miRNA:   3'- -CGCCG----CCACau-GCGAAaaaaGUGCGG- -5'
25468 5' -49.9 NC_005336.1 + 43089 0.66 0.996992
Target:  5'- cGCGGuCGGUG-ACGCg----UCGgagGCCa -3'
miRNA:   3'- -CGCC-GCCACaUGCGaaaaaAGUg--CGG- -5'
25468 5' -49.9 NC_005336.1 + 53683 0.66 0.997463
Target:  5'- cGCuGCGcGUgGUGCGCUUccu--GCGCCg -3'
miRNA:   3'- -CGcCGC-CA-CAUGCGAAaaaagUGCGG- -5'
25468 5' -49.9 NC_005336.1 + 35186 0.66 0.997463
Target:  5'- uGCGGCGauuuuaaaguacGUGUACaCUUucagUUUUguCGCCg -3'
miRNA:   3'- -CGCCGC------------CACAUGcGAA----AAAAguGCGG- -5'
25468 5' -49.9 NC_005336.1 + 130117 0.66 0.995764
Target:  5'- gGCGGCGGcGUccaacccGCGCgcgug-C-CGCCg -3'
miRNA:   3'- -CGCCGCCaCA-------UGCGaaaaaaGuGCGG- -5'
25468 5' -49.9 NC_005336.1 + 50708 0.66 0.99645
Target:  5'- aGgGGCGcGaGUGCGCUUcc--CGCGCUc -3'
miRNA:   3'- -CgCCGC-CaCAUGCGAAaaaaGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.