miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25468 5' -49.9 NC_005336.1 + 3514 0.67 0.992729
Target:  5'- aGCGGCGGcgc-CGCggggcggaagagCGCGCCg -3'
miRNA:   3'- -CGCCGCCacauGCGaaaaaa------GUGCGG- -5'
25468 5' -49.9 NC_005336.1 + 3514 0.67 0.992729
Target:  5'- aGCGGCGGcgc-CGCggggcggaagagCGCGCCg -3'
miRNA:   3'- -CGCCGCCacauGCGaaaaaa------GUGCGG- -5'
25468 5' -49.9 NC_005336.1 + 3607 0.79 0.591904
Target:  5'- aUGGUGGUGUugGCUguggugucgggUCugGCCg -3'
miRNA:   3'- cGCCGCCACAugCGAaaaa-------AGugCGG- -5'
25468 5' -49.9 NC_005336.1 + 3607 0.79 0.591904
Target:  5'- aUGGUGGUGUugGCUguggugucgggUCugGCCg -3'
miRNA:   3'- cGCCGCCACAugCGAaaaa-------AGugCGG- -5'
25468 5' -49.9 NC_005336.1 + 5477 0.7 0.957706
Target:  5'- cGCGGcCGcGUGgcCGCUg--UUCaccaGCGCCa -3'
miRNA:   3'- -CGCC-GC-CACauGCGAaaaAAG----UGCGG- -5'
25468 5' -49.9 NC_005336.1 + 6098 0.68 0.987068
Target:  5'- cGCGGCGaUGUGCGggUacg-CGCGCa -3'
miRNA:   3'- -CGCCGCcACAUGCgaAaaaaGUGCGg -5'
25468 5' -49.9 NC_005336.1 + 6694 0.73 0.878003
Target:  5'- aGCGGCGucacgccGUGgcagucgcagGCGUUUgggUUCGCGCCg -3'
miRNA:   3'- -CGCCGC-------CACa---------UGCGAAaa-AAGUGCGG- -5'
25468 5' -49.9 NC_005336.1 + 6799 0.69 0.974146
Target:  5'- aGCGGCgucaugccguaGGUGU-CGCccucgUUCACGCg -3'
miRNA:   3'- -CGCCG-----------CCACAuGCGaaaa-AAGUGCGg -5'
25468 5' -49.9 NC_005336.1 + 7023 0.67 0.992413
Target:  5'- aGCGGCgugaagccgcaGGUGUccuugGCGUUUacgucCGCGCCa -3'
miRNA:   3'- -CGCCG-----------CCACA-----UGCGAAaaaa-GUGCGG- -5'
25468 5' -49.9 NC_005336.1 + 8430 0.7 0.957706
Target:  5'- aGCGGCgucaugucguaGGUGUcugucgcggucACGCUggcgcCGCGCCg -3'
miRNA:   3'- -CGCCG-----------CCACA-----------UGCGAaaaaaGUGCGG- -5'
25468 5' -49.9 NC_005336.1 + 8721 0.73 0.863478
Target:  5'- cCGGCGGUGgggACGCacuggUUUCG-GCCa -3'
miRNA:   3'- cGCCGCCACa--UGCGaaa--AAAGUgCGG- -5'
25468 5' -49.9 NC_005336.1 + 9640 0.67 0.993426
Target:  5'- cGCGGCcuGGUGcgcgaGCGCUgcg-UCcgagaGCGCCu -3'
miRNA:   3'- -CGCCG--CCACa----UGCGAaaaaAG-----UGCGG- -5'
25468 5' -49.9 NC_005336.1 + 10133 0.68 0.985361
Target:  5'- aGCGGCGuGcgGUcgaccACGCUggcggcgUUCACGUCc -3'
miRNA:   3'- -CGCCGC-Ca-CA-----UGCGAaaa----AAGUGCGG- -5'
25468 5' -49.9 NC_005336.1 + 10149 0.7 0.949477
Target:  5'- cGCGGCGGUGUGCaCg----UCGUGCg -3'
miRNA:   3'- -CGCCGCCACAUGcGaaaaaAGUGCGg -5'
25468 5' -49.9 NC_005336.1 + 10617 0.71 0.935249
Target:  5'- cGCGGCGGcGcGCGCgcccucCGCGUCg -3'
miRNA:   3'- -CGCCGCCaCaUGCGaaaaaaGUGCGG- -5'
25468 5' -49.9 NC_005336.1 + 11720 0.69 0.974146
Target:  5'- cGCGGCcGcGUGCGCUcg---CGCGCUc -3'
miRNA:   3'- -CGCCGcCaCAUGCGAaaaaaGUGCGG- -5'
25468 5' -49.9 NC_005336.1 + 11807 0.7 0.961455
Target:  5'- cGCGcuCGGcGUGCGCgcg-UUCACGCg -3'
miRNA:   3'- -CGCc-GCCaCAUGCGaaaaAAGUGCGg -5'
25468 5' -49.9 NC_005336.1 + 13314 0.68 0.983487
Target:  5'- gGCGGCGGggaUGUGCGag-UUUUCAgGg- -3'
miRNA:   3'- -CGCCGCC---ACAUGCgaaAAAAGUgCgg -5'
25468 5' -49.9 NC_005336.1 + 13411 0.68 0.985361
Target:  5'- gGCGGCGGggaugGUuaGCUccg--CGCGCCc -3'
miRNA:   3'- -CGCCGCCa----CAugCGAaaaaaGUGCGG- -5'
25468 5' -49.9 NC_005336.1 + 14022 0.67 0.992413
Target:  5'- uUGGCGGccUGgACGCUUUUcUCAgCgGCCg -3'
miRNA:   3'- cGCCGCC--ACaUGCGAAAAaAGU-G-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.