miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25472 5' -54.3 NC_005336.1 + 9679 0.66 0.93157
Target:  5'- cGCGGCcGCGGCGGCG-----GCCUCc -3'
miRNA:   3'- uUGCUGuCGCUGUCGCuaacuCGGAG- -5'
25472 5' -54.3 NC_005336.1 + 36270 0.66 0.93157
Target:  5'- cACGAgCAGCG--GGCGGaUGAGCCg- -3'
miRNA:   3'- uUGCU-GUCGCugUCGCUaACUCGGag -5'
25472 5' -54.3 NC_005336.1 + 27467 0.66 0.93157
Target:  5'- cACGcCAGCGGCugAGCGAUgucGGCCa- -3'
miRNA:   3'- uUGCuGUCGCUG--UCGCUAac-UCGGag -5'
25472 5' -54.3 NC_005336.1 + 98192 0.66 0.93157
Target:  5'- uGCG-CAGCGGCucguggcgcuGGCGGUggacgggcUGGGCUUCg -3'
miRNA:   3'- uUGCuGUCGCUG----------UCGCUA--------ACUCGGAG- -5'
25472 5' -54.3 NC_005336.1 + 119391 0.66 0.926165
Target:  5'- cGCGugGGCGugGGCGAgcucuuccaGGCgCUCc -3'
miRNA:   3'- uUGCugUCGCugUCGCUaac------UCG-GAG- -5'
25472 5' -54.3 NC_005336.1 + 70049 0.66 0.926165
Target:  5'- cGGCGAC-GCGauGCGGCGcgUGuGCCa- -3'
miRNA:   3'- -UUGCUGuCGC--UGUCGCuaACuCGGag -5'
25472 5' -54.3 NC_005336.1 + 83621 0.66 0.926165
Target:  5'- gGACaGCAGCGAgucCAGCGcgUcGGCUUCg -3'
miRNA:   3'- -UUGcUGUCGCU---GUCGCuaAcUCGGAG- -5'
25472 5' -54.3 NC_005336.1 + 58159 0.66 0.926165
Target:  5'- cGGCGACGGCGcgGCcGCGAU--GGCCg- -3'
miRNA:   3'- -UUGCUGUCGC--UGuCGCUAacUCGGag -5'
25472 5' -54.3 NC_005336.1 + 46048 0.66 0.926165
Target:  5'- cAACGACGGUGuguACAGCGGaaUGAacGCCUg -3'
miRNA:   3'- -UUGCUGUCGC---UGUCGCUa-ACU--CGGAg -5'
25472 5' -54.3 NC_005336.1 + 98492 0.66 0.926165
Target:  5'- -cCGGCGGCGACAuCGAccacGCCUCc -3'
miRNA:   3'- uuGCUGUCGCUGUcGCUaacuCGGAG- -5'
25472 5' -54.3 NC_005336.1 + 33140 0.66 0.920504
Target:  5'- -cCGcACGGCGGCGGgGAgagcccgGAGCCg- -3'
miRNA:   3'- uuGC-UGUCGCUGUCgCUaa-----CUCGGag -5'
25472 5' -54.3 NC_005336.1 + 26180 0.66 0.920504
Target:  5'- gGACG-CGGCGGCcGCGAUcuUG-GUCUCc -3'
miRNA:   3'- -UUGCuGUCGCUGuCGCUA--ACuCGGAG- -5'
25472 5' -54.3 NC_005336.1 + 98466 0.66 0.920504
Target:  5'- cGGCGGCGGCGACcucuacaacGGCGGccgcuUUGcGGaCCUCg -3'
miRNA:   3'- -UUGCUGUCGCUG---------UCGCU-----AAC-UC-GGAG- -5'
25472 5' -54.3 NC_005336.1 + 90677 0.66 0.914589
Target:  5'- --aGACcGCGACGGCGG-UGuGCCg- -3'
miRNA:   3'- uugCUGuCGCUGUCGCUaACuCGGag -5'
25472 5' -54.3 NC_005336.1 + 105664 0.66 0.914589
Target:  5'- -cUGAUAGCGGCGGCGAUcggcgugcugcUGuGUUUCc -3'
miRNA:   3'- uuGCUGUCGCUGUCGCUA-----------ACuCGGAG- -5'
25472 5' -54.3 NC_005336.1 + 86391 0.66 0.914589
Target:  5'- -cCGGCAGCGGCGaguacGCGAccGAgGUCUCg -3'
miRNA:   3'- uuGCUGUCGCUGU-----CGCUaaCU-CGGAG- -5'
25472 5' -54.3 NC_005336.1 + 59163 0.66 0.912765
Target:  5'- gGGCGACGGCuggauggugcacaaGGCGGCGGccgUGGaCCUCg -3'
miRNA:   3'- -UUGCUGUCG--------------CUGUCGCUa--ACUcGGAG- -5'
25472 5' -54.3 NC_005336.1 + 126054 0.66 0.90842
Target:  5'- aAACGACAGCGGCGaCGAaggcugGGGCgaCUCu -3'
miRNA:   3'- -UUGCUGUCGCUGUcGCUaa----CUCG--GAG- -5'
25472 5' -54.3 NC_005336.1 + 89533 0.66 0.90842
Target:  5'- cGACGGCGGCGGCuGCccgGGUcGAGCgcagCUCg -3'
miRNA:   3'- -UUGCUGUCGCUGuCG---CUAaCUCG----GAG- -5'
25472 5' -54.3 NC_005336.1 + 16869 0.67 0.901999
Target:  5'- cGugGGCAGCGcgcGCAGCGu---GGCCUg -3'
miRNA:   3'- -UugCUGUCGC---UGUCGCuaacUCGGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.