miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25472 5' -54.3 NC_005336.1 + 119782 1.08 0.003592
Target:  5'- cAACGACAGCGACAGCGAUUGAGCCUCg -3'
miRNA:   3'- -UUGCUGUCGCUGUCGCUAACUCGGAG- -5'
25472 5' -54.3 NC_005336.1 + 114651 0.83 0.17332
Target:  5'- uGACGGCGGCGGCAGCGAgcgcgUGAGCa-- -3'
miRNA:   3'- -UUGCUGUCGCUGUCGCUa----ACUCGgag -5'
25472 5' -54.3 NC_005336.1 + 114537 0.76 0.433144
Target:  5'- --gGACAGCGACAGCGAgggUGAcggagacaGUCUCu -3'
miRNA:   3'- uugCUGUCGCUGUCGCUa--ACU--------CGGAG- -5'
25472 5' -54.3 NC_005336.1 + 133362 0.75 0.451876
Target:  5'- --aGGCGGCGGCGGCGc-UGGGCUUCg -3'
miRNA:   3'- uugCUGUCGCUGUCGCuaACUCGGAG- -5'
25472 5' -54.3 NC_005336.1 + 118380 0.75 0.480778
Target:  5'- --gGAUGGCGGCAGCGAa--GGCCUCg -3'
miRNA:   3'- uugCUGUCGCUGUCGCUaacUCGGAG- -5'
25472 5' -54.3 NC_005336.1 + 58389 0.73 0.572165
Target:  5'- uGGCGGCGGCGccGCuGCGGUUGAcGCCg- -3'
miRNA:   3'- -UUGCUGUCGC--UGuCGCUAACU-CGGag -5'
25472 5' -54.3 NC_005336.1 + 67679 0.72 0.614229
Target:  5'- cGCG--GGCGGCAGCGGcuccaGAGCCUCg -3'
miRNA:   3'- uUGCugUCGCUGUCGCUaa---CUCGGAG- -5'
25472 5' -54.3 NC_005336.1 + 114405 0.72 0.642782
Target:  5'- cGCGGCGGUGGCcggcgagcgcacggAGCGcgUGGGCUUCc -3'
miRNA:   3'- uUGCUGUCGCUG--------------UCGCuaACUCGGAG- -5'
25472 5' -54.3 NC_005336.1 + 71572 0.72 0.656518
Target:  5'- -uCGGCAGCGGCAcgcGCGA---GGCCUCc -3'
miRNA:   3'- uuGCUGUCGCUGU---CGCUaacUCGGAG- -5'
25472 5' -54.3 NC_005336.1 + 28645 0.71 0.666007
Target:  5'- cGACGAUaugGGCGACAcacagacGCGGUcgcccacacucuUGGGCCUCa -3'
miRNA:   3'- -UUGCUG---UCGCUGU-------CGCUA------------ACUCGGAG- -5'
25472 5' -54.3 NC_005336.1 + 48343 0.71 0.66706
Target:  5'- cAUGGCGcGCGGCAGCGuggccAGCCUCg -3'
miRNA:   3'- uUGCUGU-CGCUGUCGCuaac-UCGGAG- -5'
25472 5' -54.3 NC_005336.1 + 103601 0.71 0.66706
Target:  5'- uGCGGcCGGCGGCGGCGAUgGuGCC-Cg -3'
miRNA:   3'- uUGCU-GUCGCUGUCGCUAaCuCGGaG- -5'
25472 5' -54.3 NC_005336.1 + 29112 0.71 0.66706
Target:  5'- gGACGGCAGCGAaAGCGAcagGGGCgaCg -3'
miRNA:   3'- -UUGCUGUCGCUgUCGCUaa-CUCGgaG- -5'
25472 5' -54.3 NC_005336.1 + 76934 0.71 0.677573
Target:  5'- uGCGGCAGCGGCGGCGcaggcgcgcgcGgcGAGUCUUc -3'
miRNA:   3'- uUGCUGUCGCUGUCGC-----------UaaCUCGGAG- -5'
25472 5' -54.3 NC_005336.1 + 14690 0.71 0.688046
Target:  5'- cAugGGCGGCGGCAGCGGcucgagGuGCCg- -3'
miRNA:   3'- -UugCUGUCGCUGUCGCUaa----CuCGGag -5'
25472 5' -54.3 NC_005336.1 + 124655 0.71 0.695348
Target:  5'- gGACGugGGCGGCGGCGugcugcacccgcgcGAGCCg- -3'
miRNA:   3'- -UUGCugUCGCUGUCGCuaa-----------CUCGGag -5'
25472 5' -54.3 NC_005336.1 + 100337 0.7 0.729341
Target:  5'- uGCGcuuCAGCGGCAGCGc--GAGCCg- -3'
miRNA:   3'- uUGCu--GUCGCUGUCGCuaaCUCGGag -5'
25472 5' -54.3 NC_005336.1 + 101208 0.7 0.729341
Target:  5'- cGCGGCAGCGAgAGCacGAgcGGGCgCUCc -3'
miRNA:   3'- uUGCUGUCGCUgUCG--CUaaCUCG-GAG- -5'
25472 5' -54.3 NC_005336.1 + 29029 0.7 0.739466
Target:  5'- cGGCGGCAGCGGCGGCuucgaGAgcaggcuuaUGAGCC-Cg -3'
miRNA:   3'- -UUGCUGUCGCUGUCG-----CUa--------ACUCGGaG- -5'
25472 5' -54.3 NC_005336.1 + 44057 0.7 0.746495
Target:  5'- uGCGACGGCGuCAuggccagccgcugcGCGGUgGAGCCUg -3'
miRNA:   3'- uUGCUGUCGCuGU--------------CGCUAaCUCGGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.