miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25472 5' -54.3 NC_005336.1 + 57958 0.67 0.901999
Target:  5'- uGACGGCAucgacaacuGCGGCGGCGcg-GAcGCCUUc -3'
miRNA:   3'- -UUGCUGU---------CGCUGUCGCuaaCU-CGGAG- -5'
25472 5' -54.3 NC_005336.1 + 10924 0.67 0.900024
Target:  5'- -gUGGCAGCGacgcagucgaagacGCAGCGuuUUGAGCUUUu -3'
miRNA:   3'- uuGCUGUCGC--------------UGUCGCu-AACUCGGAG- -5'
25472 5' -54.3 NC_005336.1 + 79279 0.67 0.898027
Target:  5'- --gGACAGCGACgucuucguguacuucAGCGAcucucUGAGCCg- -3'
miRNA:   3'- uugCUGUCGCUG---------------UCGCUa----ACUCGGag -5'
25472 5' -54.3 NC_005336.1 + 115430 0.67 0.895329
Target:  5'- aGGCGGucgcCGGCGACGGCGAcgcGGCCg- -3'
miRNA:   3'- -UUGCU----GUCGCUGUCGCUaacUCGGag -5'
25472 5' -54.3 NC_005336.1 + 98358 0.67 0.895329
Target:  5'- aGGCGAguccCAGCGACAGUGuggacAGCCUg -3'
miRNA:   3'- -UUGCU----GUCGCUGUCGCuaac-UCGGAg -5'
25472 5' -54.3 NC_005336.1 + 55543 0.67 0.895329
Target:  5'- -uCGACGGCGACgAG-GAgUGGGCCg- -3'
miRNA:   3'- uuGCUGUCGCUG-UCgCUaACUCGGag -5'
25472 5' -54.3 NC_005336.1 + 87947 0.67 0.888414
Target:  5'- gGGCGGCGGCGgacugcACGGCGcc-GAgcGCCUCg -3'
miRNA:   3'- -UUGCUGUCGC------UGUCGCuaaCU--CGGAG- -5'
25472 5' -54.3 NC_005336.1 + 24063 0.67 0.888414
Target:  5'- cACG-CAGCGGC-GCGggUGcgccacGGCCUCg -3'
miRNA:   3'- uUGCuGUCGCUGuCGCuaAC------UCGGAG- -5'
25472 5' -54.3 NC_005336.1 + 51648 0.67 0.888414
Target:  5'- uGCGACGGCGACGcGCuacuGAUcGAGCUg- -3'
miRNA:   3'- uUGCUGUCGCUGU-CG----CUAaCUCGGag -5'
25472 5' -54.3 NC_005336.1 + 19776 0.67 0.888414
Target:  5'- cGGCGACGGCGGCGcCGAcaaaucucUUGAGCa-- -3'
miRNA:   3'- -UUGCUGUCGCUGUcGCU--------AACUCGgag -5'
25472 5' -54.3 NC_005336.1 + 101025 0.67 0.888414
Target:  5'- uAGCGGCggauGGCGGuCAGCG--UGAGCCg- -3'
miRNA:   3'- -UUGCUG----UCGCU-GUCGCuaACUCGGag -5'
25472 5' -54.3 NC_005336.1 + 104921 0.67 0.888414
Target:  5'- cGCGGCGGCGGCaucaagaucGGCGAgaugGAGCg-- -3'
miRNA:   3'- uUGCUGUCGCUG---------UCGCUaa--CUCGgag -5'
25472 5' -54.3 NC_005336.1 + 14980 0.67 0.888414
Target:  5'- cAGCGGCgAGCGcCgAGCGcc-GGGCCUCg -3'
miRNA:   3'- -UUGCUG-UCGCuG-UCGCuaaCUCGGAG- -5'
25472 5' -54.3 NC_005336.1 + 94964 0.67 0.881258
Target:  5'- -cCGGCGGCGACuGCGGc-GAGCUg- -3'
miRNA:   3'- uuGCUGUCGCUGuCGCUaaCUCGGag -5'
25472 5' -54.3 NC_005336.1 + 30499 0.67 0.881258
Target:  5'- cGCGGCGGCGGCcGCGAUguucgUGAcGCUg- -3'
miRNA:   3'- uUGCUGUCGCUGuCGCUA-----ACU-CGGag -5'
25472 5' -54.3 NC_005336.1 + 74234 0.67 0.881258
Target:  5'- gAACGACcucgaacuccAGCGugGGCGA--GGGCCg- -3'
miRNA:   3'- -UUGCUG----------UCGCugUCGCUaaCUCGGag -5'
25472 5' -54.3 NC_005336.1 + 120590 0.67 0.881258
Target:  5'- cGCGGCGGCGACGcCGGcgGAcGCCgUCg -3'
miRNA:   3'- uUGCUGUCGCUGUcGCUaaCU-CGG-AG- -5'
25472 5' -54.3 NC_005336.1 + 129377 0.67 0.873865
Target:  5'- uGCGGCAGCGcGCGGaGAcgGAGCC-Cg -3'
miRNA:   3'- uUGCUGUCGC-UGUCgCUaaCUCGGaG- -5'
25472 5' -54.3 NC_005336.1 + 15723 0.67 0.873865
Target:  5'- cAGCGACgcGGCGACGGCGuccgcggGAGgCCg- -3'
miRNA:   3'- -UUGCUG--UCGCUGUCGCuaa----CUC-GGag -5'
25472 5' -54.3 NC_005336.1 + 25434 0.67 0.866241
Target:  5'- cGCGGC-GCGGcCGGCGAa--GGCCUCg -3'
miRNA:   3'- uUGCUGuCGCU-GUCGCUaacUCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.