miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25472 5' -54.3 NC_005336.1 + 3509 0.69 0.816018
Target:  5'- -cCGGCAGCGGCGGCGccgcgGGGCg-- -3'
miRNA:   3'- uuGCUGUCGCUGUCGCuaa--CUCGgag -5'
25472 5' -54.3 NC_005336.1 + 3509 0.69 0.816018
Target:  5'- -cCGGCAGCGGCGGCGccgcgGGGCg-- -3'
miRNA:   3'- uuGCUGUCGCUGUCGCuaa--CUCGgag -5'
25472 5' -54.3 NC_005336.1 + 7053 0.68 0.842045
Target:  5'- cGCG-CcGCGACAuGCGGUUGAGCgUUu -3'
miRNA:   3'- uUGCuGuCGCUGU-CGCUAACUCGgAG- -5'
25472 5' -54.3 NC_005336.1 + 9679 0.66 0.93157
Target:  5'- cGCGGCcGCGGCGGCG-----GCCUCc -3'
miRNA:   3'- uUGCUGuCGCUGUCGCuaacuCGGAG- -5'
25472 5' -54.3 NC_005336.1 + 9820 0.69 0.806974
Target:  5'- cACGAaGGCGAC-GCGGUUgccGAGCCUg -3'
miRNA:   3'- uUGCUgUCGCUGuCGCUAA---CUCGGAg -5'
25472 5' -54.3 NC_005336.1 + 10924 0.67 0.900024
Target:  5'- -gUGGCAGCGacgcagucgaagacGCAGCGuuUUGAGCUUUu -3'
miRNA:   3'- uuGCUGUCGC--------------UGUCGCu-AACUCGGAG- -5'
25472 5' -54.3 NC_005336.1 + 11424 0.69 0.806974
Target:  5'- uGACGACGGCG-CAGCa---GAGCCg- -3'
miRNA:   3'- -UUGCUGUCGCuGUCGcuaaCUCGGag -5'
25472 5' -54.3 NC_005336.1 + 13307 0.68 0.842045
Target:  5'- aGACGAgGGCGGCGGgGAUgugcGAGUUUUc -3'
miRNA:   3'- -UUGCUgUCGCUGUCgCUAa---CUCGGAG- -5'
25472 5' -54.3 NC_005336.1 + 13634 0.7 0.759406
Target:  5'- uGCGGCGGCGGCAGCagcggGAGCa-- -3'
miRNA:   3'- uUGCUGUCGCUGUCGcuaa-CUCGgag -5'
25472 5' -54.3 NC_005336.1 + 14057 0.69 0.816018
Target:  5'- cAUGGCGGCGGCcGCGcc--GGCCUCg -3'
miRNA:   3'- uUGCUGUCGCUGuCGCuaacUCGGAG- -5'
25472 5' -54.3 NC_005336.1 + 14690 0.71 0.688046
Target:  5'- cAugGGCGGCGGCAGCGGcucgagGuGCCg- -3'
miRNA:   3'- -UugCUGUCGCUGUCGCUaa----CuCGGag -5'
25472 5' -54.3 NC_005336.1 + 14980 0.67 0.888414
Target:  5'- cAGCGGCgAGCGcCgAGCGcc-GGGCCUCg -3'
miRNA:   3'- -UUGCUG-UCGCuG-UCGCuaaCUCGGAG- -5'
25472 5' -54.3 NC_005336.1 + 15723 0.67 0.873865
Target:  5'- cAGCGACgcGGCGACGGCGuccgcggGAGgCCg- -3'
miRNA:   3'- -UUGCUG--UCGCUGUCGCuaa----CUC-GGag -5'
25472 5' -54.3 NC_005336.1 + 16869 0.67 0.901999
Target:  5'- cGugGGCAGCGcgcGCAGCGu---GGCCUg -3'
miRNA:   3'- -UugCUGUCGC---UGUCGCuaacUCGGAg -5'
25472 5' -54.3 NC_005336.1 + 19776 0.67 0.888414
Target:  5'- cGGCGACGGCGGCGcCGAcaaaucucUUGAGCa-- -3'
miRNA:   3'- -UUGCUGUCGCUGUcGCU--------AACUCGgag -5'
25472 5' -54.3 NC_005336.1 + 24063 0.67 0.888414
Target:  5'- cACG-CAGCGGC-GCGggUGcgccacGGCCUCg -3'
miRNA:   3'- uUGCuGUCGCUGuCGCuaAC------UCGGAG- -5'
25472 5' -54.3 NC_005336.1 + 25434 0.67 0.866241
Target:  5'- cGCGGC-GCGGcCGGCGAa--GGCCUCg -3'
miRNA:   3'- uUGCUGuCGCU-GUCGCUaacUCGGAG- -5'
25472 5' -54.3 NC_005336.1 + 26180 0.66 0.920504
Target:  5'- gGACG-CGGCGGCcGCGAUcuUG-GUCUCc -3'
miRNA:   3'- -UUGCuGUCGCUGuCGCUA--ACuCGGAG- -5'
25472 5' -54.3 NC_005336.1 + 27467 0.66 0.93157
Target:  5'- cACGcCAGCGGCugAGCGAUgucGGCCa- -3'
miRNA:   3'- uUGCuGUCGCUG--UCGCUAac-UCGGag -5'
25472 5' -54.3 NC_005336.1 + 28645 0.71 0.666007
Target:  5'- cGACGAUaugGGCGACAcacagacGCGGUcgcccacacucuUGGGCCUCa -3'
miRNA:   3'- -UUGCUG---UCGCUGU-------CGCUA------------ACUCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.