miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25472 5' -54.3 NC_005336.1 + 51648 0.67 0.888414
Target:  5'- uGCGACGGCGACGcGCuacuGAUcGAGCUg- -3'
miRNA:   3'- uUGCUGUCGCUGU-CG----CUAaCUCGGag -5'
25472 5' -54.3 NC_005336.1 + 3509 0.69 0.816018
Target:  5'- -cCGGCAGCGGCGGCGccgcgGGGCg-- -3'
miRNA:   3'- uuGCUGUCGCUGUCGCuaa--CUCGgag -5'
25472 5' -54.3 NC_005336.1 + 37662 0.68 0.824884
Target:  5'- -cCGGCGGCG-CGGCGucgaUGAGCC-Cg -3'
miRNA:   3'- uuGCUGUCGCuGUCGCua--ACUCGGaG- -5'
25472 5' -54.3 NC_005336.1 + 35042 0.68 0.833562
Target:  5'- cGACGAgAGCGACuuGGCGAagUUGAucGCgUCg -3'
miRNA:   3'- -UUGCUgUCGCUG--UCGCU--AACU--CGgAG- -5'
25472 5' -54.3 NC_005336.1 + 69185 0.68 0.850324
Target:  5'- cGCGGCGcGCGACGggcaguucgcgcGCGAgcGGGCCUUc -3'
miRNA:   3'- uUGCUGU-CGCUGU------------CGCUaaCUCGGAG- -5'
25472 5' -54.3 NC_005336.1 + 34920 0.68 0.858391
Target:  5'- cACGACGaUGACGGCGAgacGAGCUUg -3'
miRNA:   3'- uUGCUGUcGCUGUCGCUaa-CUCGGAg -5'
25472 5' -54.3 NC_005336.1 + 25434 0.67 0.866241
Target:  5'- cGCGGC-GCGGcCGGCGAa--GGCCUCg -3'
miRNA:   3'- uUGCUGuCGCU-GUCGCUaacUCGGAG- -5'
25472 5' -54.3 NC_005336.1 + 94964 0.67 0.881258
Target:  5'- -cCGGCGGCGACuGCGGc-GAGCUg- -3'
miRNA:   3'- uuGCUGUCGCUGuCGCUaaCUCGGag -5'
25472 5' -54.3 NC_005336.1 + 14980 0.67 0.888414
Target:  5'- cAGCGGCgAGCGcCgAGCGcc-GGGCCUCg -3'
miRNA:   3'- -UUGCUG-UCGCuG-UCGCuaaCUCGGAG- -5'
25472 5' -54.3 NC_005336.1 + 11424 0.69 0.806974
Target:  5'- uGACGACGGCG-CAGCa---GAGCCg- -3'
miRNA:   3'- -UUGCUGUCGCuGUCGcuaaCUCGGag -5'
25472 5' -54.3 NC_005336.1 + 9820 0.69 0.806974
Target:  5'- cACGAaGGCGAC-GCGGUUgccGAGCCUg -3'
miRNA:   3'- uUGCUgUCGCUGuCGCUAA---CUCGGAg -5'
25472 5' -54.3 NC_005336.1 + 75385 0.69 0.797761
Target:  5'- cACGAUcuGGCG-CAGCGA---GGCCUCg -3'
miRNA:   3'- uUGCUG--UCGCuGUCGCUaacUCGGAG- -5'
25472 5' -54.3 NC_005336.1 + 114537 0.76 0.433144
Target:  5'- --gGACAGCGACAGCGAgggUGAcggagacaGUCUCu -3'
miRNA:   3'- uugCUGUCGCUGUCGCUa--ACU--------CGGAG- -5'
25472 5' -54.3 NC_005336.1 + 133362 0.75 0.451876
Target:  5'- --aGGCGGCGGCGGCGc-UGGGCUUCg -3'
miRNA:   3'- uugCUGUCGCUGUCGCuaACUCGGAG- -5'
25472 5' -54.3 NC_005336.1 + 58389 0.73 0.572165
Target:  5'- uGGCGGCGGCGccGCuGCGGUUGAcGCCg- -3'
miRNA:   3'- -UUGCUGUCGC--UGuCGCUAACU-CGGag -5'
25472 5' -54.3 NC_005336.1 + 67679 0.72 0.614229
Target:  5'- cGCG--GGCGGCAGCGGcuccaGAGCCUCg -3'
miRNA:   3'- uUGCugUCGCUGUCGCUaa---CUCGGAG- -5'
25472 5' -54.3 NC_005336.1 + 76934 0.71 0.677573
Target:  5'- uGCGGCAGCGGCGGCGcaggcgcgcgcGgcGAGUCUUc -3'
miRNA:   3'- uUGCUGUCGCUGUCGC-----------UaaCUCGGAG- -5'
25472 5' -54.3 NC_005336.1 + 29029 0.7 0.739466
Target:  5'- cGGCGGCAGCGGCGGCuucgaGAgcaggcuuaUGAGCC-Cg -3'
miRNA:   3'- -UUGCUGUCGCUGUCG-----CUa--------ACUCGGaG- -5'
25472 5' -54.3 NC_005336.1 + 13634 0.7 0.759406
Target:  5'- uGCGGCGGCGGCAGCagcggGAGCa-- -3'
miRNA:   3'- uUGCUGUCGCUGUCGcuaa-CUCGgag -5'
25472 5' -54.3 NC_005336.1 + 75980 0.69 0.7692
Target:  5'- uGGCGGCcGCG-CGGCGGUa-GGCCUCg -3'
miRNA:   3'- -UUGCUGuCGCuGUCGCUAacUCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.