miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25474 5' -54.6 NC_005336.1 + 94472 0.66 0.945325
Target:  5'- ---aGCCGGGCguaCGGGA--CGCUGCc -3'
miRNA:   3'- gcugUGGUUCGa--GCCCUuuGCGACGc -5'
25474 5' -54.6 NC_005336.1 + 128584 0.66 0.945325
Target:  5'- cCGGCGCCGuggaguacuGGcCUCGGaucauaGAcGCGCUGCu -3'
miRNA:   3'- -GCUGUGGU---------UC-GAGCC------CUuUGCGACGc -5'
25474 5' -54.6 NC_005336.1 + 121832 0.66 0.945325
Target:  5'- -aGCACU--GCUCGGaGGAGUGCUGCa -3'
miRNA:   3'- gcUGUGGuuCGAGCC-CUUUGCGACGc -5'
25474 5' -54.6 NC_005336.1 + 97190 0.66 0.945325
Target:  5'- uGACGCUGcaucuggcgugcGGCuUCGGGAaGACGCUGa- -3'
miRNA:   3'- gCUGUGGU------------UCG-AGCCCU-UUGCGACgc -5'
25474 5' -54.6 NC_005336.1 + 92823 0.66 0.945325
Target:  5'- aCGACGCCAAGCgCGu---GCgGCUGCu -3'
miRNA:   3'- -GCUGUGGUUCGaGCccuuUG-CGACGc -5'
25474 5' -54.6 NC_005336.1 + 12661 0.66 0.945325
Target:  5'- gCGGCGCUgcGC-CGGGGggUGUcGCGc -3'
miRNA:   3'- -GCUGUGGuuCGaGCCCUuuGCGaCGC- -5'
25474 5' -54.6 NC_005336.1 + 120789 0.66 0.945325
Target:  5'- cCGACACCGGcGCcuUCGGGcccaucuucguGGACGCcGCc -3'
miRNA:   3'- -GCUGUGGUU-CG--AGCCC-----------UUUGCGaCGc -5'
25474 5' -54.6 NC_005336.1 + 101292 0.66 0.945325
Target:  5'- -cACAUCAgcAGCUUGGGA-AC-CUGCGa -3'
miRNA:   3'- gcUGUGGU--UCGAGCCCUuUGcGACGC- -5'
25474 5' -54.6 NC_005336.1 + 117150 0.66 0.945325
Target:  5'- aCGACGCCGggaacgcaGGCU-GGGuucuuGCGCgcgGCGu -3'
miRNA:   3'- -GCUGUGGU--------UCGAgCCCuu---UGCGa--CGC- -5'
25474 5' -54.6 NC_005336.1 + 71727 0.66 0.945325
Target:  5'- uCGAgGCCGuaCUCGGcGAAgaaaacGCGCUGCc -3'
miRNA:   3'- -GCUgUGGUucGAGCC-CUU------UGCGACGc -5'
25474 5' -54.6 NC_005336.1 + 50505 0.66 0.943973
Target:  5'- gGGCGCCGcgcccgcggcggaaGGCcugUCGGGAcGCGCcgaaGCGg -3'
miRNA:   3'- gCUGUGGU--------------UCG---AGCCCUuUGCGa---CGC- -5'
25474 5' -54.6 NC_005336.1 + 84229 0.66 0.941204
Target:  5'- uGGCACCGcggggcaguggcgauGGCgcuaGGGGcgacuguccgguugGACGCUGCa -3'
miRNA:   3'- gCUGUGGU---------------UCGag--CCCU--------------UUGCGACGc -5'
25474 5' -54.6 NC_005336.1 + 11860 0.66 0.940734
Target:  5'- cCGGCGCCAA----GGGcAGCGCUGUGc -3'
miRNA:   3'- -GCUGUGGUUcgagCCCuUUGCGACGC- -5'
25474 5' -54.6 NC_005336.1 + 91651 0.66 0.940734
Target:  5'- uGGCGuCCAuucuGGCgCGGGAGGCGUcgGUGa -3'
miRNA:   3'- gCUGU-GGU----UCGaGCCCUUUGCGa-CGC- -5'
25474 5' -54.6 NC_005336.1 + 129413 0.66 0.940734
Target:  5'- gGACGCCGGcGCgcgCGuggaccucccGGAGACcuGCUGCGg -3'
miRNA:   3'- gCUGUGGUU-CGa--GC----------CCUUUG--CGACGC- -5'
25474 5' -54.6 NC_005336.1 + 110731 0.66 0.940734
Target:  5'- uGAuCACCGAGCaCGGGc-ACGUggGCGg -3'
miRNA:   3'- gCU-GUGGUUCGaGCCCuuUGCGa-CGC- -5'
25474 5' -54.6 NC_005336.1 + 9532 0.66 0.940734
Target:  5'- gCGACucuGCCAcagcccgcGGCUCGGGcuGCGUguucaGCGc -3'
miRNA:   3'- -GCUG---UGGU--------UCGAGCCCuuUGCGa----CGC- -5'
25474 5' -54.6 NC_005336.1 + 130042 0.66 0.940734
Target:  5'- aGuACugCGAGUUCuGGGGcGGCGuCUGCGu -3'
miRNA:   3'- gC-UGugGUUCGAG-CCCU-UUGC-GACGC- -5'
25474 5' -54.6 NC_005336.1 + 116589 0.66 0.940734
Target:  5'- aGAUguACuCGcGCUCGGGcAGCGCcGCGa -3'
miRNA:   3'- gCUG--UG-GUuCGAGCCCuUUGCGaCGC- -5'
25474 5' -54.6 NC_005336.1 + 30260 0.66 0.940261
Target:  5'- cCGugA-UAAGgUCGGGGAGCcugacguGCUGCGg -3'
miRNA:   3'- -GCugUgGUUCgAGCCCUUUG-------CGACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.