miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25476 3' -59.5 NC_005336.1 + 84989 0.66 0.763811
Target:  5'- cUUCGACCCcGAGugCCUGcGCUa--- -3'
miRNA:   3'- aGAGCUGGGaCUCugGGAC-CGGcucc -5'
25476 3' -59.5 NC_005336.1 + 125886 0.66 0.745168
Target:  5'- gUUCGACCCUGGgccuGACCCUGaccccaGCCaAGa -3'
miRNA:   3'- aGAGCUGGGACU----CUGGGAC------CGGcUCc -5'
25476 3' -59.5 NC_005336.1 + 6550 0.67 0.706827
Target:  5'- ---aGGCCCUcgGAGAUCUUGGCCGuGc -3'
miRNA:   3'- agagCUGGGA--CUCUGGGACCGGCuCc -5'
25476 3' -59.5 NC_005336.1 + 94477 0.67 0.706827
Target:  5'- -gUCGACCCcgccGAGACggCCgacGCCGAGGc -3'
miRNA:   3'- agAGCUGGGa---CUCUG--GGac-CGGCUCC- -5'
25476 3' -59.5 NC_005336.1 + 57306 0.67 0.706827
Target:  5'- gCUCGuGCCCgagaucGAGACCC-GGCCcucGGGa -3'
miRNA:   3'- aGAGC-UGGGa-----CUCUGGGaCCGGc--UCC- -5'
25476 3' -59.5 NC_005336.1 + 29340 0.67 0.686281
Target:  5'- cCUCGGCCgUguccagcgucggcGAGACgCUGGCCuuGGg -3'
miRNA:   3'- aGAGCUGGgA-------------CUCUGgGACCGGcuCC- -5'
25476 3' -59.5 NC_005336.1 + 61384 0.68 0.647685
Target:  5'- gCUaCGACgCgGGGAUCgUGGCCGAGa -3'
miRNA:   3'- aGA-GCUGgGaCUCUGGgACCGGCUCc -5'
25476 3' -59.5 NC_005336.1 + 81732 0.69 0.598
Target:  5'- --aUGAgCCUGGccuCCCUGGCCGAGcGg -3'
miRNA:   3'- agaGCUgGGACUcu-GGGACCGGCUC-C- -5'
25476 3' -59.5 NC_005336.1 + 45683 0.69 0.588107
Target:  5'- cCUCGAUCUUGAGACC--GGCCGcGa -3'
miRNA:   3'- aGAGCUGGGACUCUGGgaCCGGCuCc -5'
25476 3' -59.5 NC_005336.1 + 64174 0.7 0.529589
Target:  5'- -gUCGGCUCUGGGACCCaGGCgCGccagacAGGc -3'
miRNA:   3'- agAGCUGGGACUCUGGGaCCG-GC------UCC- -5'
25476 3' -59.5 NC_005336.1 + 47990 0.7 0.529589
Target:  5'- ---gGACCCcGAGugCgUGGCCGGGa -3'
miRNA:   3'- agagCUGGGaCUCugGgACCGGCUCc -5'
25476 3' -59.5 NC_005336.1 + 121947 1.09 0.001346
Target:  5'- uUCUCGACCCUGAGACCCUGGCCGAGGc -3'
miRNA:   3'- -AGAGCUGGGACUCUGGGACCGGCUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.