miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25480 5' -53 NC_005336.1 + 26866 0.66 0.973947
Target:  5'- cCAGCGGCauCUCGAGCagGCGcuuggccacgcGCAgCAGCGu -3'
miRNA:   3'- -GUCGCUG--GAGCUCG--CGU-----------UGUaGUUGC- -5'
25480 5' -53 NC_005336.1 + 123320 0.66 0.973947
Target:  5'- -cGCgGGCUcaUCGAGCGCGGCGcgugCGugGg -3'
miRNA:   3'- guCG-CUGG--AGCUCGCGUUGUa---GUugC- -5'
25480 5' -53 NC_005336.1 + 58448 0.66 0.973947
Target:  5'- --uCGGCCUCGAgGCGCGcCAgCAGCu -3'
miRNA:   3'- gucGCUGGAGCU-CGCGUuGUaGUUGc -5'
25480 5' -53 NC_005336.1 + 67687 0.66 0.973947
Target:  5'- gCAGCGgcuccagaGCCUCGAagacuGCGCGGCucgggaaCAGCGc -3'
miRNA:   3'- -GUCGC--------UGGAGCU-----CGCGUUGua-----GUUGC- -5'
25480 5' -53 NC_005336.1 + 55178 0.66 0.973947
Target:  5'- -cGCGcUCUCGGuGUGCGAgGUCGGCa -3'
miRNA:   3'- guCGCuGGAGCU-CGCGUUgUAGUUGc -5'
25480 5' -53 NC_005336.1 + 25801 0.66 0.973947
Target:  5'- uCGGCGACgagcuccggCGAGCGCGGCucgCAAgGc -3'
miRNA:   3'- -GUCGCUGga-------GCUCGCGUUGua-GUUgC- -5'
25480 5' -53 NC_005336.1 + 98967 0.66 0.973947
Target:  5'- cCGGCGccGCCgUCGAGCGCua---CAACGc -3'
miRNA:   3'- -GUCGC--UGG-AGCUCGCGuuguaGUUGC- -5'
25480 5' -53 NC_005336.1 + 98156 0.66 0.973947
Target:  5'- --uCGGuuUUGGGCGCGACGUgGGCGc -3'
miRNA:   3'- gucGCUggAGCUCGCGUUGUAgUUGC- -5'
25480 5' -53 NC_005336.1 + 66990 0.66 0.973947
Target:  5'- aGGUcauguACUUCGGGCGCuucAACAUCGugGa -3'
miRNA:   3'- gUCGc----UGGAGCUCGCG---UUGUAGUugC- -5'
25480 5' -53 NC_005336.1 + 38157 0.66 0.973947
Target:  5'- -cGCGGCCcuccucggUgGAGCGC-ACcgCGACGa -3'
miRNA:   3'- guCGCUGG--------AgCUCGCGuUGuaGUUGC- -5'
25480 5' -53 NC_005336.1 + 98527 0.66 0.973947
Target:  5'- cCAGCGcGCaugcgCGAGCGCAuGC-UCAGCa -3'
miRNA:   3'- -GUCGC-UGga---GCUCGCGU-UGuAGUUGc -5'
25480 5' -53 NC_005336.1 + 68415 0.66 0.973947
Target:  5'- uCGGgGACCgcgUCGGGCGUgGGCGcCAGCGa -3'
miRNA:   3'- -GUCgCUGG---AGCUCGCG-UUGUaGUUGC- -5'
25480 5' -53 NC_005336.1 + 131382 0.66 0.971132
Target:  5'- gCAGCGAgUUCucGCGCuACGUCAgagACGc -3'
miRNA:   3'- -GUCGCUgGAGcuCGCGuUGUAGU---UGC- -5'
25480 5' -53 NC_005336.1 + 19781 0.66 0.971132
Target:  5'- aCGGCGGCgccgacaaaucuCUUGAGCagcuGCAGCAUC-GCGu -3'
miRNA:   3'- -GUCGCUG------------GAGCUCG----CGUUGUAGuUGC- -5'
25480 5' -53 NC_005336.1 + 132982 0.66 0.971132
Target:  5'- gGGCGA---CGAGCGCGAguUCGugGu -3'
miRNA:   3'- gUCGCUggaGCUCGCGUUguAGUugC- -5'
25480 5' -53 NC_005336.1 + 99450 0.66 0.971132
Target:  5'- -uGCGugCg-GAGgGCGACGUCGcucGCGg -3'
miRNA:   3'- guCGCugGagCUCgCGUUGUAGU---UGC- -5'
25480 5' -53 NC_005336.1 + 136021 0.66 0.971132
Target:  5'- uGGCGGCCgCGGgccGCGCGGCGgggUAGCc -3'
miRNA:   3'- gUCGCUGGaGCU---CGCGUUGUa--GUUGc -5'
25480 5' -53 NC_005336.1 + 15657 0.66 0.971132
Target:  5'- -cGCGGCugCUCGcuGCGCGaucGCGUCAGCc -3'
miRNA:   3'- guCGCUG--GAGCu-CGCGU---UGUAGUUGc -5'
25480 5' -53 NC_005336.1 + 91688 0.66 0.971132
Target:  5'- cCGGCGcACCgcauGCGCAGCcgCGACc -3'
miRNA:   3'- -GUCGC-UGGagcuCGCGUUGuaGUUGc -5'
25480 5' -53 NC_005336.1 + 46267 0.66 0.971132
Target:  5'- uGGCGAUCU-GcGCGCGGCGcugCGGCGa -3'
miRNA:   3'- gUCGCUGGAgCuCGCGUUGUa--GUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.