miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25483 3' -56.6 NC_005336.1 + 17569 0.66 0.849711
Target:  5'- -uGUCCUCGCUGGacacggCGGccaCGCCUcugaGGCa -3'
miRNA:   3'- uuCAGGAGCGACCa-----GCUc--GCGGA----UUG- -5'
25483 3' -56.6 NC_005336.1 + 75268 0.66 0.841555
Target:  5'- cAGGUCCUCGUccacGGUgGcGGCGCCg--- -3'
miRNA:   3'- -UUCAGGAGCGa---CCAgC-UCGCGGauug -5'
25483 3' -56.6 NC_005336.1 + 7281 0.66 0.833203
Target:  5'- -cGUCUUCGCa-GUUGGGCGUCUuGCg -3'
miRNA:   3'- uuCAGGAGCGacCAGCUCGCGGAuUG- -5'
25483 3' -56.6 NC_005336.1 + 75132 0.66 0.833203
Target:  5'- ---aCCggagCGCUcGUCGAGCGCCgggaAGCg -3'
miRNA:   3'- uucaGGa---GCGAcCAGCUCGCGGa---UUG- -5'
25483 3' -56.6 NC_005336.1 + 95710 0.66 0.815938
Target:  5'- -cGUCCgcagcacgCGCUGGgCG-GCGCCgcGCg -3'
miRNA:   3'- uuCAGGa-------GCGACCaGCuCGCGGauUG- -5'
25483 3' -56.6 NC_005336.1 + 72866 0.67 0.807043
Target:  5'- gAAGgCCUCGCUGGagGAGCuGCUcGAg -3'
miRNA:   3'- -UUCaGGAGCGACCagCUCG-CGGaUUg -5'
25483 3' -56.6 NC_005336.1 + 95035 0.67 0.797984
Target:  5'- gGGGUCCUCGUaggacaUGGUCG-GCGUg-GACc -3'
miRNA:   3'- -UUCAGGAGCG------ACCAGCuCGCGgaUUG- -5'
25483 3' -56.6 NC_005336.1 + 94295 0.67 0.779411
Target:  5'- cAGGUCCUUGUUGcGcggaacggCGGGCGCCgaGACg -3'
miRNA:   3'- -UUCAGGAGCGAC-Ca-------GCUCGCGGa-UUG- -5'
25483 3' -56.6 NC_005336.1 + 93071 0.67 0.779411
Target:  5'- -uGUCCUCGa-GGUCGGGCuCCaGGCu -3'
miRNA:   3'- uuCAGGAGCgaCCAGCUCGcGGaUUG- -5'
25483 3' -56.6 NC_005336.1 + 34649 0.68 0.750552
Target:  5'- -cGUCgUCGCUGGUgaacucuaggaGAGCGCCggucaGGCg -3'
miRNA:   3'- uuCAGgAGCGACCAg----------CUCGCGGa----UUG- -5'
25483 3' -56.6 NC_005336.1 + 7890 0.68 0.750552
Target:  5'- cGAGgCCUCGCUGGgccCG-GCGUCcAGCg -3'
miRNA:   3'- -UUCaGGAGCGACCa--GCuCGCGGaUUG- -5'
25483 3' -56.6 NC_005336.1 + 66443 0.68 0.734748
Target:  5'- cGAGUUCUCGCaGGagGGguaccugcugcggccGCGCCUGGCc -3'
miRNA:   3'- -UUCAGGAGCGaCCagCU---------------CGCGGAUUG- -5'
25483 3' -56.6 NC_005336.1 + 28759 0.68 0.730759
Target:  5'- uGAGcUUCUCGUa-GUCGAGCGCCUcGACc -3'
miRNA:   3'- -UUC-AGGAGCGacCAGCUCGCGGA-UUG- -5'
25483 3' -56.6 NC_005336.1 + 86029 0.68 0.720725
Target:  5'- cGG-CCUCGCUGGcCGuGCuGCCUuuCg -3'
miRNA:   3'- uUCaGGAGCGACCaGCuCG-CGGAuuG- -5'
25483 3' -56.6 NC_005336.1 + 106079 0.69 0.690192
Target:  5'- cGAGUCCUCGCUGuacaUCGA-CGUCUccGACg -3'
miRNA:   3'- -UUCAGGAGCGACc---AGCUcGCGGA--UUG- -5'
25483 3' -56.6 NC_005336.1 + 14573 0.69 0.690192
Target:  5'- -uGUCCUCGUUGauGUCG-GUGCCcAGCa -3'
miRNA:   3'- uuCAGGAGCGAC--CAGCuCGCGGaUUG- -5'
25483 3' -56.6 NC_005336.1 + 15739 0.69 0.679901
Target:  5'- gGGGcUCUUCGCUGaG-CGAGCGCCg--- -3'
miRNA:   3'- -UUC-AGGAGCGAC-CaGCUCGCGGauug -5'
25483 3' -56.6 NC_005336.1 + 76642 0.7 0.596861
Target:  5'- --uUUUUCGCUGGUCG-GCGCUUAGg -3'
miRNA:   3'- uucAGGAGCGACCAGCuCGCGGAUUg -5'
25483 3' -56.6 NC_005336.1 + 40565 0.71 0.586517
Target:  5'- gAGGUCCgcgaagGCgGcGUCGAGCGCCUcGCa -3'
miRNA:   3'- -UUCAGGag----CGaC-CAGCUCGCGGAuUG- -5'
25483 3' -56.6 NC_005336.1 + 110361 0.72 0.525411
Target:  5'- cGGUCCUCGuCUGcGUCcauGCGCCUGcACg -3'
miRNA:   3'- uUCAGGAGC-GAC-CAGcu-CGCGGAU-UG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.