miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25483 5' -58.3 NC_005336.1 + 15692 0.66 0.796625
Target:  5'- -cGUCCGUGgGCUCggGCUGuaCCGcGACg -3'
miRNA:   3'- caCAGGCACgCGAGa-CGGC--GGUcUUG- -5'
25483 5' -58.3 NC_005336.1 + 126429 0.66 0.796625
Target:  5'- -gGUCCG-GuCGCcgCUGCUGCaAGAACu -3'
miRNA:   3'- caCAGGCaC-GCGa-GACGGCGgUCUUG- -5'
25483 5' -58.3 NC_005336.1 + 93563 0.66 0.796625
Target:  5'- aGUG-CCG-GUGCcagacUUGCCGCUGGAGCu -3'
miRNA:   3'- -CACaGGCaCGCGa----GACGGCGGUCUUG- -5'
25483 5' -58.3 NC_005336.1 + 55944 0.66 0.787534
Target:  5'- ---aCCG-GCGC-CUGCCGCCA-AGCc -3'
miRNA:   3'- cacaGGCaCGCGaGACGGCGGUcUUG- -5'
25483 5' -58.3 NC_005336.1 + 123748 0.66 0.787534
Target:  5'- cGUG-CCGaGCuGCUC-GCCGCCGGcuGCg -3'
miRNA:   3'- -CACaGGCaCG-CGAGaCGGCGGUCu-UG- -5'
25483 5' -58.3 NC_005336.1 + 110097 0.66 0.787534
Target:  5'- -cGUCCucgacGUGCGCguggaacacgUGCCGCgAGGGCa -3'
miRNA:   3'- caCAGG-----CACGCGag--------ACGGCGgUCUUG- -5'
25483 5' -58.3 NC_005336.1 + 21003 0.66 0.787534
Target:  5'- -cGUCaGUGUGCUUcGCCGCgAGGucGCg -3'
miRNA:   3'- caCAGgCACGCGAGaCGGCGgUCU--UG- -5'
25483 5' -58.3 NC_005336.1 + 15693 0.66 0.787534
Target:  5'- gGUGUCaCGcacGCGUUgCgGCgGCCGGAACg -3'
miRNA:   3'- -CACAG-GCa--CGCGA-GaCGgCGGUCUUG- -5'
25483 5' -58.3 NC_005336.1 + 37101 0.66 0.778303
Target:  5'- gGUGgaacUCCGagGgGCUgUUGCCGCCGGAGu -3'
miRNA:   3'- -CAC----AGGCa-CgCGA-GACGGCGGUCUUg -5'
25483 5' -58.3 NC_005336.1 + 123477 0.66 0.76894
Target:  5'- -gGgcgCCGUGCGCUCgaugcugggGUCGCUAGucucgGACg -3'
miRNA:   3'- caCa--GGCACGCGAGa--------CGGCGGUC-----UUG- -5'
25483 5' -58.3 NC_005336.1 + 38085 0.66 0.76894
Target:  5'- -cGUCCGcgGcCGCga-GCCGCgCGGAGCg -3'
miRNA:   3'- caCAGGCa-C-GCGagaCGGCG-GUCUUG- -5'
25483 5' -58.3 NC_005336.1 + 84660 0.66 0.759455
Target:  5'- -aGUCagcgaCGUgGCGCucUCUGCCGCCgAGAAg -3'
miRNA:   3'- caCAG-----GCA-CGCG--AGACGGCGG-UCUUg -5'
25483 5' -58.3 NC_005336.1 + 13429 0.66 0.749858
Target:  5'- --cUCCGcGCGCcCgaagGCCGCCAGcGGCg -3'
miRNA:   3'- cacAGGCaCGCGaGa---CGGCGGUC-UUG- -5'
25483 5' -58.3 NC_005336.1 + 48434 0.67 0.740157
Target:  5'- -cGUCCGgaacaUGUGCUCgGCCaacGCCGGcGCg -3'
miRNA:   3'- caCAGGC-----ACGCGAGaCGG---CGGUCuUG- -5'
25483 5' -58.3 NC_005336.1 + 6647 0.67 0.740157
Target:  5'- -cGUCCacgaGCGCggCggagacGCCGCCGGAGCc -3'
miRNA:   3'- caCAGGca--CGCGa-Ga-----CGGCGGUCUUG- -5'
25483 5' -58.3 NC_005336.1 + 117558 0.67 0.730361
Target:  5'- aUGUCCGUgaaGCGCUCUcgcaGCCGCgCGucuGCg -3'
miRNA:   3'- cACAGGCA---CGCGAGA----CGGCG-GUcu-UG- -5'
25483 5' -58.3 NC_005336.1 + 7249 0.67 0.730361
Target:  5'- -cGUCUGUGCuaGCUC-GUCGUCGGAGu -3'
miRNA:   3'- caCAGGCACG--CGAGaCGGCGGUCUUg -5'
25483 5' -58.3 NC_005336.1 + 75032 0.67 0.730361
Target:  5'- uGUGcUCGcGcCGCUCcGCCGCaCAGAGCu -3'
miRNA:   3'- -CACaGGCaC-GCGAGaCGGCG-GUCUUG- -5'
25483 5' -58.3 NC_005336.1 + 17831 0.67 0.72048
Target:  5'- -cGUCCGUGaaCGCguugacgaUCUGCCGCaC-GAGCa -3'
miRNA:   3'- caCAGGCAC--GCG--------AGACGGCG-GuCUUG- -5'
25483 5' -58.3 NC_005336.1 + 76312 0.67 0.72048
Target:  5'- uUGUacaCCGUGCGCgcggGCCGCUGGcGCc -3'
miRNA:   3'- cACA---GGCACGCGaga-CGGCGGUCuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.