miRNA display CGI


Results 1 - 20 of 108 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25484 3' -57.5 NC_005336.1 + 126986 0.66 0.870369
Target:  5'- gGACGUGGagcGCAUgcGCCGGcugcuggacgagggcGCGGaCGUGa -3'
miRNA:   3'- gCUGCACU---UGUA--CGGCC---------------CGCC-GCACg -5'
25484 3' -57.5 NC_005336.1 + 35391 0.66 0.867446
Target:  5'- gCGugGUGAACuUGUCcccgaggauGGcGCGGCGcucGCg -3'
miRNA:   3'- -GCugCACUUGuACGG---------CC-CGCCGCa--CG- -5'
25484 3' -57.5 NC_005336.1 + 10522 0.66 0.859995
Target:  5'- -uGCGUc-GCggGCgCGGGCGGCGggGCu -3'
miRNA:   3'- gcUGCAcuUGuaCG-GCCCGCCGCa-CG- -5'
25484 3' -57.5 NC_005336.1 + 73301 0.66 0.859995
Target:  5'- gGACGUGG---UGCUGGGgGagauCGUGCg -3'
miRNA:   3'- gCUGCACUuguACGGCCCgCc---GCACG- -5'
25484 3' -57.5 NC_005336.1 + 22153 0.66 0.852344
Target:  5'- uGACGUu--UAUGCCGGccGCGGCGa-- -3'
miRNA:   3'- gCUGCAcuuGUACGGCC--CGCCGCacg -5'
25484 3' -57.5 NC_005336.1 + 135799 0.66 0.852344
Target:  5'- uGGCG---GCAggcGCgCGGGCGGCGgGCc -3'
miRNA:   3'- gCUGCacuUGUa--CG-GCCCGCCGCaCG- -5'
25484 3' -57.5 NC_005336.1 + 123395 0.66 0.852344
Target:  5'- aCGcCGUGcACGaucugaGCCGGcGCGGCGUcuccGCg -3'
miRNA:   3'- -GCuGCACuUGUa-----CGGCC-CGCCGCA----CG- -5'
25484 3' -57.5 NC_005336.1 + 94947 0.66 0.852344
Target:  5'- gGACGcccgcGGGCGcGCC-GGCGGCGacUGCg -3'
miRNA:   3'- gCUGCa----CUUGUaCGGcCCGCCGC--ACG- -5'
25484 3' -57.5 NC_005336.1 + 27545 0.66 0.852344
Target:  5'- aCGACG---GCGuUGUCGGcGCGGCGcGCc -3'
miRNA:   3'- -GCUGCacuUGU-ACGGCC-CGCCGCaCG- -5'
25484 3' -57.5 NC_005336.1 + 134429 0.66 0.851568
Target:  5'- cCGcCGUGGACGcUGCUGcuGGCGGUugccgcagugacgGUGCu -3'
miRNA:   3'- -GCuGCACUUGU-ACGGC--CCGCCG-------------CACG- -5'
25484 3' -57.5 NC_005336.1 + 89636 0.66 0.844499
Target:  5'- gGGCGUGGGguUuCUGGaGCGGCGcaucUGCg -3'
miRNA:   3'- gCUGCACUUguAcGGCC-CGCCGC----ACG- -5'
25484 3' -57.5 NC_005336.1 + 58758 0.66 0.844499
Target:  5'- -uGCG-GAACGUGCuCcGGCGGC-UGCu -3'
miRNA:   3'- gcUGCaCUUGUACG-GcCCGCCGcACG- -5'
25484 3' -57.5 NC_005336.1 + 88792 0.66 0.828253
Target:  5'- gCGGCGUGGACccGCugcggaagaugaCGGGUuGGUGaUGCg -3'
miRNA:   3'- -GCUGCACUUGuaCG------------GCCCG-CCGC-ACG- -5'
25484 3' -57.5 NC_005336.1 + 96153 0.66 0.828253
Target:  5'- uGACGcGcAGCGcguacucGCCGGGCgucGGCGUGUc -3'
miRNA:   3'- gCUGCaC-UUGUa------CGGCCCG---CCGCACG- -5'
25484 3' -57.5 NC_005336.1 + 33653 0.66 0.828253
Target:  5'- -cGCGUGccgccgcacucAAUGUGCgCGGGCGGCGa-- -3'
miRNA:   3'- gcUGCAC-----------UUGUACG-GCCCGCCGCacg -5'
25484 3' -57.5 NC_005336.1 + 105570 0.66 0.828253
Target:  5'- -cGCGUGccGCGUcaccucggcGCCGGGCcGGCG-GCa -3'
miRNA:   3'- gcUGCACu-UGUA---------CGGCCCG-CCGCaCG- -5'
25484 3' -57.5 NC_005336.1 + 57719 0.66 0.828253
Target:  5'- aGACGUG-GCGUccGCCGugugcGCGGCGaGCg -3'
miRNA:   3'- gCUGCACuUGUA--CGGCc----CGCCGCaCG- -5'
25484 3' -57.5 NC_005336.1 + 29334 0.66 0.828253
Target:  5'- gGACcUGAACGagGCCGGGuuGC-UGCa -3'
miRNA:   3'- gCUGcACUUGUa-CGGCCCgcCGcACG- -5'
25484 3' -57.5 NC_005336.1 + 32976 0.66 0.825755
Target:  5'- gGAuCGUGGGgcccgcgggaggcuCGUGCCGGuccGCGGCGUuuGCc -3'
miRNA:   3'- gCU-GCACUU--------------GUACGGCC---CGCCGCA--CG- -5'
25484 3' -57.5 NC_005336.1 + 69088 0.67 0.820712
Target:  5'- aGcACGUGAGCGUGCUcuacugcaugGGGCGcacggacuuccagaaCGUGCg -3'
miRNA:   3'- gC-UGCACUUGUACGG----------CCCGCc--------------GCACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.