miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25484 3' -57.5 NC_005336.1 + 131250 1.12 0.001294
Target:  5'- cCGACGUGAACAUGCCGGGCGGCGUGCg -3'
miRNA:   3'- -GCUGCACUUGUACGGCCCGCCGCACG- -5'
25484 3' -57.5 NC_005336.1 + 45847 0.79 0.227526
Target:  5'- gCGACGUGGAU-UGCgUGGGCGGCGccgGCg -3'
miRNA:   3'- -GCUGCACUUGuACG-GCCCGCCGCa--CG- -5'
25484 3' -57.5 NC_005336.1 + 10103 0.78 0.258723
Target:  5'- -uGCGUGGACAUGCCcGuaagacagacgugcaGCGGCGUGCg -3'
miRNA:   3'- gcUGCACUUGUACGGcC---------------CGCCGCACG- -5'
25484 3' -57.5 NC_005336.1 + 59802 0.77 0.274951
Target:  5'- cCGugGUGAGCcUGgUGGGCGGCGaugacgccgUGCg -3'
miRNA:   3'- -GCugCACUUGuACgGCCCGCCGC---------ACG- -5'
25484 3' -57.5 NC_005336.1 + 135831 0.75 0.376296
Target:  5'- gCGGCG-GGGCGgcUGCCGcuGGCGGCGcUGCu -3'
miRNA:   3'- -GCUGCaCUUGU--ACGGC--CCGCCGC-ACG- -5'
25484 3' -57.5 NC_005336.1 + 16103 0.75 0.384432
Target:  5'- -cGCGUGGugGUGCa--GCGGCGUGCg -3'
miRNA:   3'- gcUGCACUugUACGgccCGCCGCACG- -5'
25484 3' -57.5 NC_005336.1 + 95820 0.74 0.426818
Target:  5'- -uGCGUGGACA-GCCgcauGGGCcGCGUGCa -3'
miRNA:   3'- gcUGCACUUGUaCGG----CCCGcCGCACG- -5'
25484 3' -57.5 NC_005336.1 + 124642 0.73 0.453542
Target:  5'- gCGACGUcauggaGGACGUGggcGGCGGCGUGCu -3'
miRNA:   3'- -GCUGCA------CUUGUACggcCCGCCGCACG- -5'
25484 3' -57.5 NC_005336.1 + 103876 0.73 0.46265
Target:  5'- aCGACGUGGGCAgaaGCaCGGucacgcggcaccGCGGCGgcgGCg -3'
miRNA:   3'- -GCUGCACUUGUa--CG-GCC------------CGCCGCa--CG- -5'
25484 3' -57.5 NC_005336.1 + 24394 0.73 0.46265
Target:  5'- uCGACGUGGucCAUGCUGGGCGcGCcgaccGUGa -3'
miRNA:   3'- -GCUGCACUu-GUACGGCCCGC-CG-----CACg -5'
25484 3' -57.5 NC_005336.1 + 125255 0.73 0.46265
Target:  5'- -cGCGUGAuCGUGCCGGGC-GCGgaGCu -3'
miRNA:   3'- gcUGCACUuGUACGGCCCGcCGCa-CG- -5'
25484 3' -57.5 NC_005336.1 + 133115 0.73 0.471854
Target:  5'- aCGGCGUGAc---GCCGcuGGCGGCGcUGCu -3'
miRNA:   3'- -GCUGCACUuguaCGGC--CCGCCGC-ACG- -5'
25484 3' -57.5 NC_005336.1 + 38363 0.72 0.509549
Target:  5'- -aGCGUGGGCGUGCuCGGcaacGCGGCGccGCu -3'
miRNA:   3'- gcUGCACUUGUACG-GCC----CGCCGCa-CG- -5'
25484 3' -57.5 NC_005336.1 + 84310 0.72 0.528866
Target:  5'- gGGCGggaucuUGAugGUguaGCCGGGCGaggcGCGUGCg -3'
miRNA:   3'- gCUGC------ACUugUA---CGGCCCGC----CGCACG- -5'
25484 3' -57.5 NC_005336.1 + 50964 0.72 0.538626
Target:  5'- gCGGCGUGc----GCCGGcGCGGCGgccgGCg -3'
miRNA:   3'- -GCUGCACuuguaCGGCC-CGCCGCa---CG- -5'
25484 3' -57.5 NC_005336.1 + 110946 0.72 0.548448
Target:  5'- gCGugGUGGACcccUGCuucgCGGGCucGGUGUGCu -3'
miRNA:   3'- -GCugCACUUGu--ACG----GCCCG--CCGCACG- -5'
25484 3' -57.5 NC_005336.1 + 29576 0.72 0.548448
Target:  5'- uCGGCGcUGcGCGUGCUGGGUgcgcugcugcgGGCGcUGCg -3'
miRNA:   3'- -GCUGC-ACuUGUACGGCCCG-----------CCGC-ACG- -5'
25484 3' -57.5 NC_005336.1 + 99939 0.72 0.548448
Target:  5'- gCGGCGgcuGCGUGCggaGGGCGcCGUGCg -3'
miRNA:   3'- -GCUGCacuUGUACGg--CCCGCcGCACG- -5'
25484 3' -57.5 NC_005336.1 + 26340 0.72 0.548448
Target:  5'- -aGCGUGAcGCGgucGCCGGGCGcGCGcGCc -3'
miRNA:   3'- gcUGCACU-UGUa--CGGCCCGC-CGCaCG- -5'
25484 3' -57.5 NC_005336.1 + 96863 0.71 0.558324
Target:  5'- gGACGgugcggUGAACGUGCUcGGCaugGGCGUGUa -3'
miRNA:   3'- gCUGC------ACUUGUACGGcCCG---CCGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.