miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25484 3' -57.5 NC_005336.1 + 10253 0.69 0.668807
Target:  5'- uGAgGUcGAguaGCGucUGCCGGcgcaGCGGCGUGCc -3'
miRNA:   3'- gCUgCA-CU---UGU--ACGGCC----CGCCGCACG- -5'
25484 3' -57.5 NC_005336.1 + 83918 0.7 0.628498
Target:  5'- aGACGgcGGGCAcGCCGGuGCGGgGcGCg -3'
miRNA:   3'- gCUGCa-CUUGUaCGGCC-CGCCgCaCG- -5'
25484 3' -57.5 NC_005336.1 + 19612 0.7 0.628498
Target:  5'- gGGCGUu-ACGUGCugCGGGCGGaagagGUGCa -3'
miRNA:   3'- gCUGCAcuUGUACG--GCCCGCCg----CACG- -5'
25484 3' -57.5 NC_005336.1 + 39875 0.7 0.63859
Target:  5'- aGuuCGUGGuc--GCCGGGCGGCGUccGCc -3'
miRNA:   3'- gCu-GCACUuguaCGGCCCGCCGCA--CG- -5'
25484 3' -57.5 NC_005336.1 + 91309 0.7 0.63859
Target:  5'- aGACGUcuacGAacuGCAUGCCGGGCgaGGCcacGCg -3'
miRNA:   3'- gCUGCA----CU---UGUACGGCCCG--CCGca-CG- -5'
25484 3' -57.5 NC_005336.1 + 110028 0.7 0.658753
Target:  5'- aGACGUGc---UGCCcGGCGGCGcucUGCg -3'
miRNA:   3'- gCUGCACuuguACGGcCCGCCGC---ACG- -5'
25484 3' -57.5 NC_005336.1 + 65998 0.7 0.658753
Target:  5'- gCGcCGUGGAgGcGCUGcGCGGCGUGUg -3'
miRNA:   3'- -GCuGCACUUgUaCGGCcCGCCGCACG- -5'
25484 3' -57.5 NC_005336.1 + 68301 0.7 0.658753
Target:  5'- gGGCGU--GCGUGCUGGcGCGcGCG-GCa -3'
miRNA:   3'- gCUGCAcuUGUACGGCC-CGC-CGCaCG- -5'
25484 3' -57.5 NC_005336.1 + 97607 0.7 0.662777
Target:  5'- gCGugGUGAACGUGuCCGuGGUcagccgccucaccaaGGUaGUGCg -3'
miRNA:   3'- -GCugCACUUGUAC-GGC-CCG---------------CCG-CACG- -5'
25484 3' -57.5 NC_005336.1 + 18116 0.7 0.60732
Target:  5'- gGGCGUGAACAUGuCCGGGaucaGGaagagccCGUaGCu -3'
miRNA:   3'- gCUGCACUUGUAC-GGCCCg---CC-------GCA-CG- -5'
25484 3' -57.5 NC_005336.1 + 74543 0.71 0.598265
Target:  5'- aCGACGU---UAUGuuuCCGGGCGGCGcGCc -3'
miRNA:   3'- -GCUGCAcuuGUAC---GGCCCGCCGCaCG- -5'
25484 3' -57.5 NC_005336.1 + 59165 0.71 0.598265
Target:  5'- gCGACGgcugGAugGUGCacaaGGCGGCG-GCc -3'
miRNA:   3'- -GCUGCa---CUugUACGgc--CCGCCGCaCG- -5'
25484 3' -57.5 NC_005336.1 + 125255 0.73 0.46265
Target:  5'- -cGCGUGAuCGUGCCGGGC-GCGgaGCu -3'
miRNA:   3'- gcUGCACUuGUACGGCCCGcCGCa-CG- -5'
25484 3' -57.5 NC_005336.1 + 38363 0.72 0.509549
Target:  5'- -aGCGUGGGCGUGCuCGGcaacGCGGCGccGCu -3'
miRNA:   3'- gcUGCACUUGUACG-GCC----CGCCGCa-CG- -5'
25484 3' -57.5 NC_005336.1 + 50964 0.72 0.538626
Target:  5'- gCGGCGUGc----GCCGGcGCGGCGgccgGCg -3'
miRNA:   3'- -GCUGCACuuguaCGGCC-CGCCGCa---CG- -5'
25484 3' -57.5 NC_005336.1 + 29576 0.72 0.548448
Target:  5'- uCGGCGcUGcGCGUGCUGGGUgcgcugcugcgGGCGcUGCg -3'
miRNA:   3'- -GCUGC-ACuUGUACGGCCCG-----------CCGC-ACG- -5'
25484 3' -57.5 NC_005336.1 + 99939 0.72 0.548448
Target:  5'- gCGGCGgcuGCGUGCggaGGGCGcCGUGCg -3'
miRNA:   3'- -GCUGCacuUGUACGg--CCCGCcGCACG- -5'
25484 3' -57.5 NC_005336.1 + 26340 0.72 0.548448
Target:  5'- -aGCGUGAcGCGgucGCCGGGCGcGCGcGCc -3'
miRNA:   3'- gcUGCACU-UGUa--CGGCCCGC-CGCaCG- -5'
25484 3' -57.5 NC_005336.1 + 74823 0.71 0.56825
Target:  5'- gGGCGUGGGCGUGauGGcGCGGCuG-GCg -3'
miRNA:   3'- gCUGCACUUGUACggCC-CGCCG-CaCG- -5'
25484 3' -57.5 NC_005336.1 + 110381 0.71 0.576223
Target:  5'- uGACGagguccaUGAGCAUcuugaugguggcgGCCGcGGCGGCG-GCg -3'
miRNA:   3'- gCUGC-------ACUUGUA-------------CGGC-CCGCCGCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.