miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25484 5' -54.6 NC_005336.1 + 15112 0.66 0.920504
Target:  5'- ---gGCGCCcGCCgacgccGCGGGCCg--- -3'
miRNA:   3'- gaugUGCGGaCGGaa----UGCCCGGauuu -5'
25484 5' -54.6 NC_005336.1 + 90080 0.66 0.920504
Target:  5'- -cGCGCgaGCCUGCC--GCaGGCCUGc- -3'
miRNA:   3'- gaUGUG--CGGACGGaaUGcCCGGAUuu -5'
25484 5' -54.6 NC_005336.1 + 92332 0.66 0.920504
Target:  5'- -aGCAUGCCcGUC--GCGGGCCg--- -3'
miRNA:   3'- gaUGUGCGGaCGGaaUGCCCGGauuu -5'
25484 5' -54.6 NC_005336.1 + 128578 0.66 0.920504
Target:  5'- -aGCACGCCggcGCCguggagUACuGGCCUc-- -3'
miRNA:   3'- gaUGUGCGGa--CGGa-----AUGcCCGGAuuu -5'
25484 5' -54.6 NC_005336.1 + 36546 0.66 0.914589
Target:  5'- gUGCGCGCCgcugggcgugaGCCgcgucGCGGGCUUGc- -3'
miRNA:   3'- gAUGUGCGGa----------CGGaa---UGCCCGGAUuu -5'
25484 5' -54.6 NC_005336.1 + 110193 0.66 0.914589
Target:  5'- --cCACGcCCUGCgUgagcGCGGGCCa--- -3'
miRNA:   3'- gauGUGC-GGACGgAa---UGCCCGGauuu -5'
25484 5' -54.6 NC_005336.1 + 127836 0.66 0.914589
Target:  5'- cCUGCGCGCggCUGCUggccGCGGGCg---- -3'
miRNA:   3'- -GAUGUGCG--GACGGaa--UGCCCGgauuu -5'
25484 5' -54.6 NC_005336.1 + 131907 0.66 0.914589
Target:  5'- gCUGgACGCCggGCCcaGCGaGGCCUc-- -3'
miRNA:   3'- -GAUgUGCGGa-CGGaaUGC-CCGGAuuu -5'
25484 5' -54.6 NC_005336.1 + 124048 0.66 0.914589
Target:  5'- gUGCGCGCC-GCCcuggcgACGcGGCCUc-- -3'
miRNA:   3'- gAUGUGCGGaCGGaa----UGC-CCGGAuuu -5'
25484 5' -54.6 NC_005336.1 + 13326 0.66 0.914589
Target:  5'- --uCACGCCcGUCUUGCcGGCCUc-- -3'
miRNA:   3'- gauGUGCGGaCGGAAUGcCCGGAuuu -5'
25484 5' -54.6 NC_005336.1 + 101459 0.66 0.914589
Target:  5'- gCUGCGCGCCUuccaGCCcucGCGcGCCUGc- -3'
miRNA:   3'- -GAUGUGCGGA----CGGaa-UGCcCGGAUuu -5'
25484 5' -54.6 NC_005336.1 + 85752 0.66 0.912152
Target:  5'- -cACGCGCCUGCCcuacuacugcuggUACGcGCCUu-- -3'
miRNA:   3'- gaUGUGCGGACGGa------------AUGCcCGGAuuu -5'
25484 5' -54.6 NC_005336.1 + 44152 0.66 0.901999
Target:  5'- -gACGCG-CUGCCggcggccACGGGUCUGGg -3'
miRNA:   3'- gaUGUGCgGACGGaa-----UGCCCGGAUUu -5'
25484 5' -54.6 NC_005336.1 + 133511 0.66 0.895329
Target:  5'- -gGCACGUggcgGCCU--CGGGCCUAu- -3'
miRNA:   3'- gaUGUGCGga--CGGAauGCCCGGAUuu -5'
25484 5' -54.6 NC_005336.1 + 128050 0.67 0.888414
Target:  5'- uCUGCACGCUcGCCaaggaGGGCgUAGAc -3'
miRNA:   3'- -GAUGUGCGGaCGGaaug-CCCGgAUUU- -5'
25484 5' -54.6 NC_005336.1 + 109184 0.67 0.888414
Target:  5'- -cACGCGCCgGUCcacgcGCGGGCCg--- -3'
miRNA:   3'- gaUGUGCGGaCGGaa---UGCCCGGauuu -5'
25484 5' -54.6 NC_005336.1 + 47786 0.67 0.887709
Target:  5'- aCUGCaagaacgACGCCUcgcgGCCgcacUGCGuGGCCUGGAu -3'
miRNA:   3'- -GAUG-------UGCGGA----CGGa---AUGC-CCGGAUUU- -5'
25484 5' -54.6 NC_005336.1 + 124626 0.67 0.873865
Target:  5'- -cGCGCGCCaggGCCg--UGGcGCCUGAAc -3'
miRNA:   3'- gaUGUGCGGa--CGGaauGCC-CGGAUUU- -5'
25484 5' -54.6 NC_005336.1 + 21724 0.67 0.866241
Target:  5'- -aGCgGCGUCcgcGCCUUGCGGGCgCUAc- -3'
miRNA:   3'- gaUG-UGCGGa--CGGAAUGCCCG-GAUuu -5'
25484 5' -54.6 NC_005336.1 + 47525 0.67 0.850324
Target:  5'- -cGCGCGUCUGCUgcgGCGGGUUc--- -3'
miRNA:   3'- gaUGUGCGGACGGaa-UGCCCGGauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.