miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25484 5' -54.6 NC_005336.1 + 44107 0.67 0.850324
Target:  5'- gUGCAUgGCCUGgCUgcgcACGGGCCg--- -3'
miRNA:   3'- gAUGUG-CGGACgGAa---UGCCCGGauuu -5'
25484 5' -54.6 NC_005336.1 + 133005 0.68 0.842045
Target:  5'- uCUGCGCGCUgGCC--AUGGGgCUGAAc -3'
miRNA:   3'- -GAUGUGCGGaCGGaaUGCCCgGAUUU- -5'
25484 5' -54.6 NC_005336.1 + 73890 0.68 0.833562
Target:  5'- -cACGCGCUcGCCc-ACGGGCCg--- -3'
miRNA:   3'- gaUGUGCGGaCGGaaUGCCCGGauuu -5'
25484 5' -54.6 NC_005336.1 + 70951 0.68 0.806974
Target:  5'- -gGCACGCCggUGCCgccgcgcgggUACGGGUCg--- -3'
miRNA:   3'- gaUGUGCGG--ACGGa---------AUGCCCGGauuu -5'
25484 5' -54.6 NC_005336.1 + 121732 0.68 0.806974
Target:  5'- -cGCGCGCggaCUGCCg-GCGGGCCc--- -3'
miRNA:   3'- gaUGUGCG---GACGGaaUGCCCGGauuu -5'
25484 5' -54.6 NC_005336.1 + 21125 0.68 0.806974
Target:  5'- uUGCGCGCCgGCgUgcacgGCGGGCUg--- -3'
miRNA:   3'- gAUGUGCGGaCGgAa----UGCCCGGauuu -5'
25484 5' -54.6 NC_005336.1 + 125829 0.69 0.759406
Target:  5'- -cGCGCGCuCUGCCUguacgugaacUACGuGGCCg--- -3'
miRNA:   3'- gaUGUGCG-GACGGA----------AUGC-CCGGauuu -5'
25484 5' -54.6 NC_005336.1 + 130498 0.7 0.739466
Target:  5'- -cGCGCGCCcGCC--GCGGaGCCUGc- -3'
miRNA:   3'- gaUGUGCGGaCGGaaUGCC-CGGAUuu -5'
25484 5' -54.6 NC_005336.1 + 109431 0.7 0.729341
Target:  5'- gCUGCugaGCCUGCUgccgUGCGGGCUc--- -3'
miRNA:   3'- -GAUGug-CGGACGGa---AUGCCCGGauuu -5'
25484 5' -54.6 NC_005336.1 + 74867 0.71 0.645954
Target:  5'- -gGCGCGCCUGCgCUgcugggGCGcGGCCg--- -3'
miRNA:   3'- gaUGUGCGGACG-GAa-----UGC-CCGGauuu -5'
25484 5' -54.6 NC_005336.1 + 43689 0.72 0.614229
Target:  5'- -gACGCGCCgagGCCgcgcgUUGCGGGCgCUGGc -3'
miRNA:   3'- gaUGUGCGGa--CGG-----AAUGCCCG-GAUUu -5'
25484 5' -54.6 NC_005336.1 + 133716 0.72 0.603671
Target:  5'- -cGCGCGCCUGCUg-GCGGGCg---- -3'
miRNA:   3'- gaUGUGCGGACGGaaUGCCCGgauuu -5'
25484 5' -54.6 NC_005336.1 + 129689 0.82 0.164479
Target:  5'- gCUGCACGUCUGUCUUACGGGCa---- -3'
miRNA:   3'- -GAUGUGCGGACGGAAUGCCCGgauuu -5'
25484 5' -54.6 NC_005336.1 + 131287 1.06 0.004651
Target:  5'- gCUACACGCCUGCCUUACGGGCCUAAAc -3'
miRNA:   3'- -GAUGUGCGGACGGAAUGCCCGGAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.