Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25484 | 5' | -54.6 | NC_005336.1 | + | 131287 | 1.06 | 0.004651 |
Target: 5'- gCUACACGCCUGCCUUACGGGCCUAAAc -3' miRNA: 3'- -GAUGUGCGGACGGAAUGCCCGGAUUU- -5' |
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25484 | 5' | -54.6 | NC_005336.1 | + | 124048 | 0.66 | 0.914589 |
Target: 5'- gUGCGCGCC-GCCcuggcgACGcGGCCUc-- -3' miRNA: 3'- gAUGUGCGGaCGGaa----UGC-CCGGAuuu -5' |
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25484 | 5' | -54.6 | NC_005336.1 | + | 131907 | 0.66 | 0.914589 |
Target: 5'- gCUGgACGCCggGCCcaGCGaGGCCUc-- -3' miRNA: 3'- -GAUgUGCGGa-CGGaaUGC-CCGGAuuu -5' |
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25484 | 5' | -54.6 | NC_005336.1 | + | 127836 | 0.66 | 0.914589 |
Target: 5'- cCUGCGCGCggCUGCUggccGCGGGCg---- -3' miRNA: 3'- -GAUGUGCG--GACGGaa--UGCCCGgauuu -5' |
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25484 | 5' | -54.6 | NC_005336.1 | + | 110193 | 0.66 | 0.914589 |
Target: 5'- --cCACGcCCUGCgUgagcGCGGGCCa--- -3' miRNA: 3'- gauGUGC-GGACGgAa---UGCCCGGauuu -5' |
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25484 | 5' | -54.6 | NC_005336.1 | + | 36546 | 0.66 | 0.914589 |
Target: 5'- gUGCGCGCCgcugggcgugaGCCgcgucGCGGGCUUGc- -3' miRNA: 3'- gAUGUGCGGa----------CGGaa---UGCCCGGAUuu -5' |
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25484 | 5' | -54.6 | NC_005336.1 | + | 13326 | 0.66 | 0.914589 |
Target: 5'- --uCACGCCcGUCUUGCcGGCCUc-- -3' miRNA: 3'- gauGUGCGGaCGGAAUGcCCGGAuuu -5' |
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25484 | 5' | -54.6 | NC_005336.1 | + | 44152 | 0.66 | 0.901999 |
Target: 5'- -gACGCG-CUGCCggcggccACGGGUCUGGg -3' miRNA: 3'- gaUGUGCgGACGGaa-----UGCCCGGAUUu -5' |
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25484 | 5' | -54.6 | NC_005336.1 | + | 109184 | 0.67 | 0.888414 |
Target: 5'- -cACGCGCCgGUCcacgcGCGGGCCg--- -3' miRNA: 3'- gaUGUGCGGaCGGaa---UGCCCGGauuu -5' |
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25484 | 5' | -54.6 | NC_005336.1 | + | 47786 | 0.67 | 0.887709 |
Target: 5'- aCUGCaagaacgACGCCUcgcgGCCgcacUGCGuGGCCUGGAu -3' miRNA: 3'- -GAUG-------UGCGGA----CGGa---AUGC-CCGGAUUU- -5' |
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25484 | 5' | -54.6 | NC_005336.1 | + | 129689 | 0.82 | 0.164479 |
Target: 5'- gCUGCACGUCUGUCUUACGGGCa---- -3' miRNA: 3'- -GAUGUGCGGACGGAAUGCCCGgauuu -5' |
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25484 | 5' | -54.6 | NC_005336.1 | + | 43689 | 0.72 | 0.614229 |
Target: 5'- -gACGCGCCgagGCCgcgcgUUGCGGGCgCUGGc -3' miRNA: 3'- gaUGUGCGGa--CGG-----AAUGCCCG-GAUUu -5' |
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25484 | 5' | -54.6 | NC_005336.1 | + | 74867 | 0.71 | 0.645954 |
Target: 5'- -gGCGCGCCUGCgCUgcugggGCGcGGCCg--- -3' miRNA: 3'- gaUGUGCGGACG-GAa-----UGC-CCGGauuu -5' |
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25484 | 5' | -54.6 | NC_005336.1 | + | 130498 | 0.7 | 0.739466 |
Target: 5'- -cGCGCGCCcGCC--GCGGaGCCUGc- -3' miRNA: 3'- gaUGUGCGGaCGGaaUGCC-CGGAUuu -5' |
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25484 | 5' | -54.6 | NC_005336.1 | + | 133005 | 0.68 | 0.842045 |
Target: 5'- uCUGCGCGCUgGCC--AUGGGgCUGAAc -3' miRNA: 3'- -GAUGUGCGGaCGGaaUGCCCgGAUUU- -5' |
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25484 | 5' | -54.6 | NC_005336.1 | + | 47525 | 0.67 | 0.850324 |
Target: 5'- -cGCGCGUCUGCUgcgGCGGGUUc--- -3' miRNA: 3'- gaUGUGCGGACGGaa-UGCCCGGauuu -5' |
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25484 | 5' | -54.6 | NC_005336.1 | + | 124626 | 0.67 | 0.873865 |
Target: 5'- -cGCGCGCCaggGCCg--UGGcGCCUGAAc -3' miRNA: 3'- gaUGUGCGGa--CGGaauGCC-CGGAUUU- -5' |
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25484 | 5' | -54.6 | NC_005336.1 | + | 133716 | 0.72 | 0.603671 |
Target: 5'- -cGCGCGCCUGCUg-GCGGGCg---- -3' miRNA: 3'- gaUGUGCGGACGGaaUGCCCGgauuu -5' |
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25484 | 5' | -54.6 | NC_005336.1 | + | 92332 | 0.66 | 0.920504 |
Target: 5'- -aGCAUGCCcGUC--GCGGGCCg--- -3' miRNA: 3'- gaUGUGCGGaCGGaaUGCCCGGauuu -5' |
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25484 | 5' | -54.6 | NC_005336.1 | + | 90080 | 0.66 | 0.920504 |
Target: 5'- -cGCGCgaGCCUGCC--GCaGGCCUGc- -3' miRNA: 3'- gaUGUG--CGGACGGaaUGcCCGGAUuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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