miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25485 3' -54 NC_005336.1 + 94975 0.66 0.927896
Target:  5'- uGCGGCGaGCUGCccggccgugggguucACCAgcagcagugCGCGCGCGg -3'
miRNA:   3'- uUGUCGUaCGACG---------------UGGUa--------GUGCGUGU- -5'
25485 3' -54 NC_005336.1 + 95501 0.66 0.925664
Target:  5'- -cCAGCA-GCUGCGCaGUC-UGCGCGa -3'
miRNA:   3'- uuGUCGUaCGACGUGgUAGuGCGUGU- -5'
25485 3' -54 NC_005336.1 + 132962 0.66 0.925664
Target:  5'- cGCGGCugcUGCUGgACgCGggCGCGCGCGu -3'
miRNA:   3'- uUGUCGu--ACGACgUG-GUa-GUGCGUGU- -5'
25485 3' -54 NC_005336.1 + 67640 0.66 0.925664
Target:  5'- cGGCGGCG-GCUcgcGCGCCG-CGCGCAaCAc -3'
miRNA:   3'- -UUGUCGUaCGA---CGUGGUaGUGCGU-GU- -5'
25485 3' -54 NC_005336.1 + 56133 0.66 0.925664
Target:  5'- gGACAGCGUGCgcgaccucaaCGCCGagucgcucagccUUACGCGCGa -3'
miRNA:   3'- -UUGUCGUACGac--------GUGGU------------AGUGCGUGU- -5'
25485 3' -54 NC_005336.1 + 19391 0.66 0.925664
Target:  5'- ---uGCAcGCUGCGCgCGUuCACGUGCAg -3'
miRNA:   3'- uuguCGUaCGACGUG-GUA-GUGCGUGU- -5'
25485 3' -54 NC_005336.1 + 9079 0.66 0.925664
Target:  5'- cAGCGGCAUGCucgcgaUGCGCgaCAUCAgGUugGa -3'
miRNA:   3'- -UUGUCGUACG------ACGUG--GUAGUgCGugU- -5'
25485 3' -54 NC_005336.1 + 48114 0.66 0.925664
Target:  5'- cGGCugcGCAUGCggUGCGCCG--GCGCGCu -3'
miRNA:   3'- -UUGu--CGUACG--ACGUGGUagUGCGUGu -5'
25485 3' -54 NC_005336.1 + 62488 0.66 0.925664
Target:  5'- uGCGGCGUGC-GCGCCuUCGUGgGCGa -3'
miRNA:   3'- uUGUCGUACGaCGUGGuAGUGCgUGU- -5'
25485 3' -54 NC_005336.1 + 90426 0.66 0.925099
Target:  5'- uGCAGgAUGUcuucgcgGCGCCGgagcuggUCACGCGCGc -3'
miRNA:   3'- uUGUCgUACGa------CGUGGU-------AGUGCGUGU- -5'
25485 3' -54 NC_005336.1 + 6534 0.66 0.922236
Target:  5'- cGugAGCAUGC-GCACCAggcccUCggagaucuuggccguGCGCGCGa -3'
miRNA:   3'- -UugUCGUACGaCGUGGU-----AG---------------UGCGUGU- -5'
25485 3' -54 NC_005336.1 + 26867 0.66 0.919898
Target:  5'- cAGCGGCAUcucgaGCagGCGCUuggcCACGCGCAg -3'
miRNA:   3'- -UUGUCGUA-----CGa-CGUGGua--GUGCGUGU- -5'
25485 3' -54 NC_005336.1 + 68609 0.66 0.919898
Target:  5'- gAAguGCGUGCggaagcGCACCAgcgcCACGCGg- -3'
miRNA:   3'- -UUguCGUACGa-----CGUGGUa---GUGCGUgu -5'
25485 3' -54 NC_005336.1 + 15015 0.66 0.919898
Target:  5'- cGCGGCGcGCggGCGgCGUCgGCGCGCGc -3'
miRNA:   3'- uUGUCGUaCGa-CGUgGUAG-UGCGUGU- -5'
25485 3' -54 NC_005336.1 + 99771 0.66 0.919898
Target:  5'- uGCGGCugcUGgUGCGCCGcuUCGgGCGCGc -3'
miRNA:   3'- uUGUCGu--ACgACGUGGU--AGUgCGUGU- -5'
25485 3' -54 NC_005336.1 + 30577 0.66 0.919898
Target:  5'- cGCGGCGaacGCgGCGCUggaguUCGCGCGCAc -3'
miRNA:   3'- uUGUCGUa--CGaCGUGGu----AGUGCGUGU- -5'
25485 3' -54 NC_005336.1 + 30375 0.66 0.919898
Target:  5'- cGGCAGCAgGCU-CAgCAgcugCGCGCGCGa -3'
miRNA:   3'- -UUGUCGUaCGAcGUgGUa---GUGCGUGU- -5'
25485 3' -54 NC_005336.1 + 32338 0.66 0.919898
Target:  5'- -uCGGCA-GCUcaGCGCCG-CGCGCGCc -3'
miRNA:   3'- uuGUCGUaCGA--CGUGGUaGUGCGUGu -5'
25485 3' -54 NC_005336.1 + 50790 0.66 0.919898
Target:  5'- cGCGGCGUcggaGCgcaGCugCAUCACGUAgAg -3'
miRNA:   3'- uUGUCGUA----CGa--CGugGUAGUGCGUgU- -5'
25485 3' -54 NC_005336.1 + 89993 0.66 0.919898
Target:  5'- uGACGGCGUcgaGCUGCuucUCGgagCGCGCGCu -3'
miRNA:   3'- -UUGUCGUA---CGACGu--GGUa--GUGCGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.