miRNA display CGI


Results 21 - 40 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25485 3' -54 NC_005336.1 + 30577 0.66 0.919898
Target:  5'- cGCGGCGaacGCgGCGCUggaguUCGCGCGCAc -3'
miRNA:   3'- uUGUCGUa--CGaCGUGGu----AGUGCGUGU- -5'
25485 3' -54 NC_005336.1 + 14848 0.66 0.919308
Target:  5'- cGACGcGCAUGCUguggagguuccgGCACagcgagagcacguCGUCGCGCGCGc -3'
miRNA:   3'- -UUGU-CGUACGA------------CGUG-------------GUAGUGCGUGU- -5'
25485 3' -54 NC_005336.1 + 95740 0.66 0.919308
Target:  5'- cGCAGCG-GCUGgccaugaCGCCGUCGCaguGCGCGg -3'
miRNA:   3'- uUGUCGUaCGAC-------GUGGUAGUG---CGUGU- -5'
25485 3' -54 NC_005336.1 + 5994 0.66 0.916313
Target:  5'- cAGCAGCGUcGCguccguguggcagcGCACCG-CGCGCAUg -3'
miRNA:   3'- -UUGUCGUA-CGa-------------CGUGGUaGUGCGUGu -5'
25485 3' -54 NC_005336.1 + 92325 0.66 0.913871
Target:  5'- cGCGGCGaGCaUGC-CCGUCGCGgGCc -3'
miRNA:   3'- uUGUCGUaCG-ACGuGGUAGUGCgUGu -5'
25485 3' -54 NC_005336.1 + 99045 0.66 0.913871
Target:  5'- cGCGaCGUGCUGCacGCCAUCucggaGCGCGa -3'
miRNA:   3'- uUGUcGUACGACG--UGGUAGug---CGUGU- -5'
25485 3' -54 NC_005336.1 + 17542 0.66 0.913871
Target:  5'- cGCGGgaCAUGUUGCGgCGcugCGCGCGCAa -3'
miRNA:   3'- uUGUC--GUACGACGUgGUa--GUGCGUGU- -5'
25485 3' -54 NC_005336.1 + 62738 0.66 0.913871
Target:  5'- cGCGGCgcGUGCUGCGCag-CAUGUGCc -3'
miRNA:   3'- uUGUCG--UACGACGUGguaGUGCGUGu -5'
25485 3' -54 NC_005336.1 + 104099 0.66 0.913871
Target:  5'- gAGCcGCA-GCgGCACggacuuCGUCACGCACAu -3'
miRNA:   3'- -UUGuCGUaCGaCGUG------GUAGUGCGUGU- -5'
25485 3' -54 NC_005336.1 + 79932 0.66 0.913871
Target:  5'- uGCGGCAUGUa-CACCGUgGgCGCGCGg -3'
miRNA:   3'- uUGUCGUACGacGUGGUAgU-GCGUGU- -5'
25485 3' -54 NC_005336.1 + 124629 0.66 0.913871
Target:  5'- cGCuGCGUGCUGCGCgaCGUCAUGgAgGa -3'
miRNA:   3'- uUGuCGUACGACGUG--GUAGUGCgUgU- -5'
25485 3' -54 NC_005336.1 + 103627 0.66 0.913871
Target:  5'- -uCGGaCGUGCUGCGCgAguUCcCGCACGu -3'
miRNA:   3'- uuGUC-GUACGACGUGgU--AGuGCGUGU- -5'
25485 3' -54 NC_005336.1 + 42610 0.66 0.913871
Target:  5'- aAGCcGCAcGCcagaUGCAgCGUCACGUACAc -3'
miRNA:   3'- -UUGuCGUaCG----ACGUgGUAGUGCGUGU- -5'
25485 3' -54 NC_005336.1 + 6095 0.66 0.913871
Target:  5'- -cCAGCAgGCgcGCGCCcUCGcCGCGCAg -3'
miRNA:   3'- uuGUCGUaCGa-CGUGGuAGU-GCGUGU- -5'
25485 3' -54 NC_005336.1 + 109127 0.66 0.913871
Target:  5'- gAAgAGCAcGCaGCGCCAcuucUUGCGCACGu -3'
miRNA:   3'- -UUgUCGUaCGaCGUGGU----AGUGCGUGU- -5'
25485 3' -54 NC_005336.1 + 129889 0.66 0.912634
Target:  5'- gGACucGC-UGCUGCACCAgcacuuucagucCGCGCGCc -3'
miRNA:   3'- -UUGu-CGuACGACGUGGUa-----------GUGCGUGu -5'
25485 3' -54 NC_005336.1 + 59210 0.66 0.912012
Target:  5'- cGCAGCAguucugcgaguccgUGCUGCGgCAcCGCGC-CAa -3'
miRNA:   3'- uUGUCGU--------------ACGACGUgGUaGUGCGuGU- -5'
25485 3' -54 NC_005336.1 + 86253 0.66 0.907583
Target:  5'- gAACuccuGCA-GCaGCGCCGgcgCGCGCGCGg -3'
miRNA:   3'- -UUGu---CGUaCGaCGUGGUa--GUGCGUGU- -5'
25485 3' -54 NC_005336.1 + 68301 0.66 0.907583
Target:  5'- --gGGCGUGC-GUGCUggCGCGCGCGg -3'
miRNA:   3'- uugUCGUACGaCGUGGuaGUGCGUGU- -5'
25485 3' -54 NC_005336.1 + 131266 0.66 0.907583
Target:  5'- gGGCGGCGUGCgccgcacgGCGCUA-CACGCc-- -3'
miRNA:   3'- -UUGUCGUACGa-------CGUGGUaGUGCGugu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.