miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25485 3' -54 NC_005336.1 + 53341 0.71 0.650966
Target:  5'- uGACGGUA-GU--CACCGUCACGCACAa -3'
miRNA:   3'- -UUGUCGUaCGacGUGGUAGUGCGUGU- -5'
25485 3' -54 NC_005336.1 + 53002 0.73 0.576095
Target:  5'- cAAUAGCGUGgUGCGCCAgCGCGUAa- -3'
miRNA:   3'- -UUGUCGUACgACGUGGUaGUGCGUgu -5'
25485 3' -54 NC_005336.1 + 134152 0.72 0.59739
Target:  5'- cGCGGaCAgGCU-CGCCGUCGCGCGCGa -3'
miRNA:   3'- uUGUC-GUaCGAcGUGGUAGUGCGUGU- -5'
25485 3' -54 NC_005336.1 + 60913 0.72 0.59739
Target:  5'- cGGCGGCGUGCgcauggaccGCGCCccCACGCGCu -3'
miRNA:   3'- -UUGUCGUACGa--------CGUGGuaGUGCGUGu -5'
25485 3' -54 NC_005336.1 + 49257 0.72 0.608083
Target:  5'- -cCGGCAU-CUGCGCCAUCcuCGCGCu -3'
miRNA:   3'- uuGUCGUAcGACGUGGUAGu-GCGUGu -5'
25485 3' -54 NC_005336.1 + 99638 0.72 0.608083
Target:  5'- cGCGGCGUGggGCACCucgcggacgCGCGCGCGc -3'
miRNA:   3'- uUGUCGUACgaCGUGGua-------GUGCGUGU- -5'
25485 3' -54 NC_005336.1 + 100744 0.72 0.618796
Target:  5'- uACGGCGUGCUGCGCgaccgCAUCcucgcggccACGCGCu -3'
miRNA:   3'- uUGUCGUACGACGUG-----GUAG---------UGCGUGu -5'
25485 3' -54 NC_005336.1 + 45648 0.72 0.640247
Target:  5'- cGCAGCA-GCUGCGCUGUC-CGCGu- -3'
miRNA:   3'- uUGUCGUaCGACGUGGUAGuGCGUgu -5'
25485 3' -54 NC_005336.1 + 81637 0.72 0.640247
Target:  5'- uGGCGGCcaucgcgGCcGCGCCGUCGcCGCGCAg -3'
miRNA:   3'- -UUGUCGua-----CGaCGUGGUAGU-GCGUGU- -5'
25485 3' -54 NC_005336.1 + 42669 0.73 0.554976
Target:  5'- -cCGGCGUGCUGC-CCcgCGCGCuGCGc -3'
miRNA:   3'- uuGUCGUACGACGuGGuaGUGCG-UGU- -5'
25485 3' -54 NC_005336.1 + 70568 0.73 0.534089
Target:  5'- gAACGGCGUGCUGgACCuggcCACGgGCGa -3'
miRNA:   3'- -UUGUCGUACGACgUGGua--GUGCgUGU- -5'
25485 3' -54 NC_005336.1 + 31156 0.74 0.52272
Target:  5'- uGCAGCcgucGCUGCgcaggccGCCAUCGCGCGCc -3'
miRNA:   3'- uUGUCGua--CGACG-------UGGUAGUGCGUGu -5'
25485 3' -54 NC_005336.1 + 55310 0.8 0.234588
Target:  5'- cAACaAGCG-GCUGCGCCAgcUCACGCGCAu -3'
miRNA:   3'- -UUG-UCGUaCGACGUGGU--AGUGCGUGU- -5'
25485 3' -54 NC_005336.1 + 62280 0.77 0.369464
Target:  5'- cGGCAGCAUGUUGCGCauguugaaggggaucUCGCGCACGg -3'
miRNA:   3'- -UUGUCGUACGACGUGgu-------------AGUGCGUGU- -5'
25485 3' -54 NC_005336.1 + 99121 0.76 0.380599
Target:  5'- cGugAGCcgGCUGCACUucggacUCACGCACGc -3'
miRNA:   3'- -UugUCGuaCGACGUGGu-----AGUGCGUGU- -5'
25485 3' -54 NC_005336.1 + 126680 0.76 0.380599
Target:  5'- -uCGGCGccugGCUGCagGCCGUCGCGCGCGu -3'
miRNA:   3'- uuGUCGUa---CGACG--UGGUAGUGCGUGU- -5'
25485 3' -54 NC_005336.1 + 135967 0.76 0.407137
Target:  5'- cGGCGGCGcUGCUGCGCgCGgcgggCGCGCGCGg -3'
miRNA:   3'- -UUGUCGU-ACGACGUG-GUa----GUGCGUGU- -5'
25485 3' -54 NC_005336.1 + 77057 0.75 0.434806
Target:  5'- uGCGGCAcaUGCUGCGCag-CACGCGCc -3'
miRNA:   3'- uUGUCGU--ACGACGUGguaGUGCGUGu -5'
25485 3' -54 NC_005336.1 + 9565 0.75 0.434806
Target:  5'- cGCGGCGUucGCgaGCACCAUCuCGCGCAg -3'
miRNA:   3'- uUGUCGUA--CGa-CGUGGUAGuGCGUGU- -5'
25485 3' -54 NC_005336.1 + 87766 0.74 0.503309
Target:  5'- -cCGGCGacUGCUGCGCgAUCGCGCGgAg -3'
miRNA:   3'- uuGUCGU--ACGACGUGgUAGUGCGUgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.