miRNA display CGI


Results 1 - 20 of 575 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25485 5' -59.9 NC_005336.1 + 54416 0.65 0.77894
Target:  5'- aCCCGCGCcUGGGCGcCucggacggguccauAUGCcgcaccuGCGGGCu -3'
miRNA:   3'- -GGGCGCGcGCUCGCaG--------------UACG-------CGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 125252 0.66 0.773527
Target:  5'- -gUGCGCGUGAucGUGcCggGCGCgGAGCu -3'
miRNA:   3'- ggGCGCGCGCU--CGCaGuaCGCG-CUCG- -5'
25485 5' -59.9 NC_005336.1 + 61648 0.66 0.773527
Target:  5'- gCCCGCGCGCGcgccggacGCGUCGguguucagGUcCGGGa -3'
miRNA:   3'- -GGGCGCGCGCu-------CGCAGUa-------CGcGCUCg -5'
25485 5' -59.9 NC_005336.1 + 29609 0.66 0.773527
Target:  5'- gCCCGCGCucacGCaGGGCGUgGUGCuG-GAGa -3'
miRNA:   3'- -GGGCGCG----CG-CUCGCAgUACG-CgCUCg -5'
25485 5' -59.9 NC_005336.1 + 6015 0.66 0.773527
Target:  5'- -aCGCGCagccggaaGCGGucGCagGUCccGCGCGAGCa -3'
miRNA:   3'- ggGCGCG--------CGCU--CG--CAGuaCGCGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 99344 0.66 0.773527
Target:  5'- gCUGCGUGCGccGCcuccggCGUGCGCGucGCg -3'
miRNA:   3'- gGGCGCGCGCu-CGca----GUACGCGCu-CG- -5'
25485 5' -59.9 NC_005336.1 + 4055 0.66 0.773527
Target:  5'- gCCGCGCGCGGaCcaaGUGCuccaCGAGCa -3'
miRNA:   3'- gGGCGCGCGCUcGcagUACGc---GCUCG- -5'
25485 5' -59.9 NC_005336.1 + 123037 0.66 0.773527
Target:  5'- gUCCGCGaccuCGCGAGCaacuUCGacaagGCGCGcGCg -3'
miRNA:   3'- -GGGCGC----GCGCUCGc---AGUa----CGCGCuCG- -5'
25485 5' -59.9 NC_005336.1 + 120623 0.66 0.773527
Target:  5'- gCUCGCGCagauGCGcGGCGUCuacgacGUGCGGcGCa -3'
miRNA:   3'- -GGGCGCG----CGC-UCGCAGua----CGCGCU-CG- -5'
25485 5' -59.9 NC_005336.1 + 16220 0.66 0.773527
Target:  5'- gUCCGCggGCGUGAGCc-CGUGUucGuCGAGCg -3'
miRNA:   3'- -GGGCG--CGCGCUCGcaGUACG--C-GCUCG- -5'
25485 5' -59.9 NC_005336.1 + 78907 0.66 0.773527
Target:  5'- gCCGCGCGCuaGGCcgacggUGUGCGCGgagguGGCg -3'
miRNA:   3'- gGGCGCGCGc-UCGca----GUACGCGC-----UCG- -5'
25485 5' -59.9 NC_005336.1 + 77081 0.66 0.773527
Target:  5'- gCCGCGUGCGccGC-UCcacgGCGuCGAGCc -3'
miRNA:   3'- gGGCGCGCGCu-CGcAGua--CGC-GCUCG- -5'
25485 5' -59.9 NC_005336.1 + 8906 0.66 0.772621
Target:  5'- uUCCGCGCccuguGCGAGaagCAUGaccaccucgcccaCGCGGGCu -3'
miRNA:   3'- -GGGCGCG-----CGCUCgcaGUAC-------------GCGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 40202 0.66 0.772621
Target:  5'- gCCGCGCGCGgagaucagcaccgGGCaGUgGUGcCGCGcGUc -3'
miRNA:   3'- gGGCGCGCGC-------------UCG-CAgUAC-GCGCuCG- -5'
25485 5' -59.9 NC_005336.1 + 107748 0.66 0.770805
Target:  5'- gCCGacuacaucgucaacCGCGCGGGCGUgAU-CGCGucGCg -3'
miRNA:   3'- gGGC--------------GCGCGCUCGCAgUAcGCGCu-CG- -5'
25485 5' -59.9 NC_005336.1 + 68369 0.66 0.765328
Target:  5'- uUCGaCGCGCGGGCGccggCGgccgcgcuguucgcgGCGCuGGGCg -3'
miRNA:   3'- gGGC-GCGCGCUCGCa---GUa--------------CGCG-CUCG- -5'
25485 5' -59.9 NC_005336.1 + 91661 0.66 0.764412
Target:  5'- uCUgGCGCGgGAgGCGUCG---GUGAGCa -3'
miRNA:   3'- -GGgCGCGCgCU-CGCAGUacgCGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 83994 0.66 0.764412
Target:  5'- --gGCGgacaCGCGGGCG-CcgGCGCGGGg -3'
miRNA:   3'- gggCGC----GCGCUCGCaGuaCGCGCUCg -5'
25485 5' -59.9 NC_005336.1 + 99490 0.66 0.764412
Target:  5'- uCUCGCGCuGCGcGgGUCG-GCGCGccGCu -3'
miRNA:   3'- -GGGCGCG-CGCuCgCAGUaCGCGCu-CG- -5'
25485 5' -59.9 NC_005336.1 + 109414 0.66 0.764412
Target:  5'- gCCGCGCGaaGGCcgccuugagCGUGCGC-AGCa -3'
miRNA:   3'- gGGCGCGCgcUCGca-------GUACGCGcUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.