miRNA display CGI


Results 1 - 20 of 575 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25485 5' -59.9 NC_005336.1 + 54416 0.65 0.77894
Target:  5'- aCCCGCGCcUGGGCGcCucggacggguccauAUGCcgcaccuGCGGGCu -3'
miRNA:   3'- -GGGCGCGcGCUCGCaG--------------UACG-------CGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 9791 0.66 0.726933
Target:  5'- --aGCGuCGCGGGCG-CGaagcGCGCGAGg -3'
miRNA:   3'- gggCGC-GCGCUCGCaGUa---CGCGCUCg -5'
25485 5' -59.9 NC_005336.1 + 115745 0.66 0.726933
Target:  5'- aCCCGCGCcgcuGCGuguacggggcauGGaCGUCcgGUGCGCGAa- -3'
miRNA:   3'- -GGGCGCG----CGC------------UC-GCAG--UACGCGCUcg -5'
25485 5' -59.9 NC_005336.1 + 124875 0.66 0.726933
Target:  5'- -aCGUGCGCcGGCGcCcUGCGCGAc- -3'
miRNA:   3'- ggGCGCGCGcUCGCaGuACGCGCUcg -5'
25485 5' -59.9 NC_005336.1 + 96155 0.66 0.726933
Target:  5'- aCgCGCaGCGCGuacucgccgGGCGUCGgcGUGuCGAGCa -3'
miRNA:   3'- -GgGCG-CGCGC---------UCGCAGUa-CGC-GCUCG- -5'
25485 5' -59.9 NC_005336.1 + 90512 0.66 0.725978
Target:  5'- aCUGCGCGCucGGGCcUCGguagcccUGCGCGucGCg -3'
miRNA:   3'- gGGCGCGCG--CUCGcAGU-------ACGCGCu-CG- -5'
25485 5' -59.9 NC_005336.1 + 52026 0.66 0.726933
Target:  5'- cCCUGCGguguccaggacCGCGuGCGU-GUGCGCGAc- -3'
miRNA:   3'- -GGGCGC-----------GCGCuCGCAgUACGCGCUcg -5'
25485 5' -59.9 NC_005336.1 + 38261 0.66 0.736438
Target:  5'- gCCGCaGaCGCGGGCGUgCua--GCGGGCc -3'
miRNA:   3'- gGGCG-C-GCGCUCGCA-GuacgCGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 44208 0.66 0.726933
Target:  5'- gCCCGCGCgGCGAGac-CccGCGCccgaggagguaGAGCg -3'
miRNA:   3'- -GGGCGCG-CGCUCgcaGuaCGCG-----------CUCG- -5'
25485 5' -59.9 NC_005336.1 + 127746 0.66 0.726933
Target:  5'- gCCCGCugcuggcCGCGGGCGUgucCGUGaaCGCGcGCa -3'
miRNA:   3'- -GGGCGc------GCGCUCGCA---GUAC--GCGCuCG- -5'
25485 5' -59.9 NC_005336.1 + 102578 0.66 0.726933
Target:  5'- aCCGCGCucguggaGAGCGcgaagacCGUGCccGCGGGCg -3'
miRNA:   3'- gGGCGCGcg-----CUCGCa------GUACG--CGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 42507 0.66 0.726933
Target:  5'- gCCCGgGCuCGAaaGUCuucgcGUGUGCGGGCc -3'
miRNA:   3'- -GGGCgCGcGCUcgCAG-----UACGCGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 49535 0.66 0.736438
Target:  5'- cUCCGCGCGCcGGUG-CAgcgGCGgccccgagacUGAGCg -3'
miRNA:   3'- -GGGCGCGCGcUCGCaGUa--CGC----------GCUCG- -5'
25485 5' -59.9 NC_005336.1 + 1609 0.66 0.736438
Target:  5'- aCCUGCGUcCGAGCGa-----GCGAGCg -3'
miRNA:   3'- -GGGCGCGcGCUCGCaguacgCGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 109732 0.66 0.725978
Target:  5'- gCCCGCGCgGCGcgaucgcGGUGUaggGCGCGuacccGCg -3'
miRNA:   3'- -GGGCGCG-CGC-------UCGCAguaCGCGCu----CG- -5'
25485 5' -59.9 NC_005336.1 + 75727 0.66 0.734544
Target:  5'- cUCCGCGagcaGCGAGacguccgcggagGUCAUGCGgucgccgcugaCGGGCg -3'
miRNA:   3'- -GGGCGCg---CGCUCg-----------CAGUACGC-----------GCUCG- -5'
25485 5' -59.9 NC_005336.1 + 75075 0.66 0.726933
Target:  5'- gCCCGUcCGCGAGCcgcgccGCGCGcGCg -3'
miRNA:   3'- -GGGCGcGCGCUCGcagua-CGCGCuCG- -5'
25485 5' -59.9 NC_005336.1 + 78171 0.66 0.726933
Target:  5'- cUCCGUGgGCauGCGguugaugucguUCAcGCGCGAGCa -3'
miRNA:   3'- -GGGCGCgCGcuCGC-----------AGUaCGCGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 15969 0.66 0.726933
Target:  5'- gCCCGaggccaaGUGCGAGgGcUCGcGCGCGuccuGCg -3'
miRNA:   3'- -GGGCg------CGCGCUCgC-AGUaCGCGCu---CG- -5'
25485 5' -59.9 NC_005336.1 + 127565 0.66 0.726933
Target:  5'- gCUCGCGCGCGAcaucauccgGCG-CAcgGCGCu-GCa -3'
miRNA:   3'- -GGGCGCGCGCU---------CGCaGUa-CGCGcuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.