miRNA display CGI


Results 1 - 20 of 575 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25485 5' -59.9 NC_005336.1 + 131523 1.12 0.00081
Target:  5'- gCCCGCGCGCGAGCGUCAUGCGCGAGCu -3'
miRNA:   3'- -GGGCGCGCGCUCGCAGUACGCGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 83251 0.89 0.03365
Target:  5'- cCuuGCGCGCGAGCGUgccCGUGCGCGAGg -3'
miRNA:   3'- -GggCGCGCGCUCGCA---GUACGCGCUCg -5'
25485 5' -59.9 NC_005336.1 + 9629 0.85 0.061611
Target:  5'- -aUGCGCGCGAGCGcggccUgGUGCGCGAGCg -3'
miRNA:   3'- ggGCGCGCGCUCGC-----AgUACGCGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 52064 0.84 0.072017
Target:  5'- gCCCGCGCGCGccuucguggacGCGgcacuggggcUCAUGCGCGAGCg -3'
miRNA:   3'- -GGGCGCGCGCu----------CGC----------AGUACGCGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 59351 0.83 0.081961
Target:  5'- aUCCGCGcCGCGGGCGUCGgccUGCGCGccgccGGCa -3'
miRNA:   3'- -GGGCGC-GCGCUCGCAGU---ACGCGC-----UCG- -5'
25485 5' -59.9 NC_005336.1 + 77932 0.83 0.088543
Target:  5'- cCUCGCGCGcCGcGCugGUCGUGCGCGAGCc -3'
miRNA:   3'- -GGGCGCGC-GCuCG--CAGUACGCGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 102349 0.83 0.090846
Target:  5'- uCgCGCGCGCGGGCGUCA-GCaCGGGCg -3'
miRNA:   3'- -GgGCGCGCGCUCGCAGUaCGcGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 9369 0.82 0.098103
Target:  5'- gCCCGCGCGUGAGCGUgcucacCAcGCGCG-GCu -3'
miRNA:   3'- -GGGCGCGCGCUCGCA------GUaCGCGCuCG- -5'
25485 5' -59.9 NC_005336.1 + 71382 0.81 0.120215
Target:  5'- gCCCGCaGCGgGGGCG-CGaGCGCGGGCg -3'
miRNA:   3'- -GGGCG-CGCgCUCGCaGUaCGCGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 14372 0.8 0.129646
Target:  5'- cCCCGCgGCGCGGucGCGgggCAguggcgGCGCGAGCa -3'
miRNA:   3'- -GGGCG-CGCGCU--CGCa--GUa-----CGCGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 50663 0.8 0.136308
Target:  5'- uCUCGCGCGCGAG-GUCGcacacggGCGUGAGCc -3'
miRNA:   3'- -GGGCGCGCGCUCgCAGUa------CGCGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 9559 0.8 0.143283
Target:  5'- gCCGCGCGCG-GCGUU---CGCGAGCa -3'
miRNA:   3'- gGGCGCGCGCuCGCAGuacGCGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 135977 0.79 0.146892
Target:  5'- gCUGCGCGCG-GCGggCGcGCGCGGGCa -3'
miRNA:   3'- gGGCGCGCGCuCGCa-GUaCGCGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 53279 0.79 0.146892
Target:  5'- uUCCGCacaaggccGCGCGAcGCGUgGUGCGCGAGg -3'
miRNA:   3'- -GGGCG--------CGCGCU-CGCAgUACGCGCUCg -5'
25485 5' -59.9 NC_005336.1 + 30754 0.79 0.146892
Target:  5'- aCCCGCGCgcuucGCGAGCGUggaggCGUGCGCGGa- -3'
miRNA:   3'- -GGGCGCG-----CGCUCGCA-----GUACGCGCUcg -5'
25485 5' -59.9 NC_005336.1 + 50301 0.79 0.146892
Target:  5'- cCCUGCGCGCGGGCGcgCGUucGCGCGAc- -3'
miRNA:   3'- -GGGCGCGCGCUCGCa-GUA--CGCGCUcg -5'
25485 5' -59.9 NC_005336.1 + 135977 0.79 0.146892
Target:  5'- gCUGCGCGCG-GCGggCGcGCGCGGGCa -3'
miRNA:   3'- gGGCGCGCGCuCGCa-GUaCGCGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 73698 0.78 0.169915
Target:  5'- uUCCGCGgcaacguCGCGgaGGCgGUCAUGCGCGAGUa -3'
miRNA:   3'- -GGGCGC-------GCGC--UCG-CAGUACGCGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 99528 0.78 0.183265
Target:  5'- aCCGCGCGCcucGAuGCuUCGUGCGCGuGCg -3'
miRNA:   3'- gGGCGCGCG---CU-CGcAGUACGCGCuCG- -5'
25485 5' -59.9 NC_005336.1 + 40572 0.78 0.183265
Target:  5'- uCCCGgGCGUGcGCGUCuUGCGCauGAGCc -3'
miRNA:   3'- -GGGCgCGCGCuCGCAGuACGCG--CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.