miRNA display CGI


Results 1 - 20 of 575 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25485 5' -59.9 NC_005336.1 + 452 0.67 0.71735
Target:  5'- gCUCGCGUgccGCGGGCGgcc-GCGCGuccGCg -3'
miRNA:   3'- -GGGCGCG---CGCUCGCaguaCGCGCu--CG- -5'
25485 5' -59.9 NC_005336.1 + 452 0.67 0.71735
Target:  5'- gCUCGCGUgccGCGGGCGgcc-GCGCGuccGCg -3'
miRNA:   3'- -GGGCGCG---CGCUCGCaguaCGCGCu--CG- -5'
25485 5' -59.9 NC_005336.1 + 1032 0.7 0.490672
Target:  5'- cCCCGCGguCGCGGGCGgcggCccgucccccggaggGUGCGCGAa- -3'
miRNA:   3'- -GGGCGC--GCGCUCGCa---G--------------UACGCGCUcg -5'
25485 5' -59.9 NC_005336.1 + 1032 0.7 0.490672
Target:  5'- cCCCGCGguCGCGGGCGgcggCccgucccccggaggGUGCGCGAa- -3'
miRNA:   3'- -GGGCGC--GCGCUCGCa---G--------------UACGCGCUcg -5'
25485 5' -59.9 NC_005336.1 + 1609 0.66 0.736438
Target:  5'- aCCUGCGUcCGAGCGa-----GCGAGCg -3'
miRNA:   3'- -GGGCGCGcGCUCGCaguacgCGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 1609 0.66 0.736438
Target:  5'- aCCUGCGUcCGAGCGa-----GCGAGCg -3'
miRNA:   3'- -GGGCGCGcGCUCGCaguacgCGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 3335 0.69 0.599336
Target:  5'- cCuuGCGCGCGGaggagaagcucGCGUgCAUGCccucgcccuGCGGGUa -3'
miRNA:   3'- -GggCGCGCGCU-----------CGCA-GUACG---------CGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 3335 0.69 0.599336
Target:  5'- cCuuGCGCGCGGaggagaagcucGCGUgCAUGCccucgcccuGCGGGUa -3'
miRNA:   3'- -GggCGCGCGCU-----------CGCA-GUACG---------CGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 3555 0.71 0.475061
Target:  5'- gCCCGCcgccaccaGCGCGAGCG-CGccgagcagccUGCGC-AGCg -3'
miRNA:   3'- -GGGCG--------CGCGCUCGCaGU----------ACGCGcUCG- -5'
25485 5' -59.9 NC_005336.1 + 3555 0.71 0.475061
Target:  5'- gCCCGCcgccaccaGCGCGAGCG-CGccgagcagccUGCGC-AGCg -3'
miRNA:   3'- -GGGCG--------CGCGCUCGCaGU----------ACGCGcUCG- -5'
25485 5' -59.9 NC_005336.1 + 3727 0.69 0.561082
Target:  5'- gCCCgggGCGCgGCGGGCG-CGgugagggaagccggcGCGCGGGCu -3'
miRNA:   3'- -GGG---CGCG-CGCUCGCaGUa--------------CGCGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 3727 0.69 0.561082
Target:  5'- gCCCgggGCGCgGCGGGCG-CGgugagggaagccggcGCGCGGGCu -3'
miRNA:   3'- -GGG---CGCG-CGCUCGCaGUa--------------CGCGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 3822 0.72 0.416977
Target:  5'- gCCCGCGCGCGcccgccgcgcgcagcAGCGcCGccGC-CGAGCg -3'
miRNA:   3'- -GGGCGCGCGC---------------UCGCaGUa-CGcGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 3822 0.72 0.416977
Target:  5'- gCCCGCGCGCGcccgccgcgcgcagcAGCGcCGccGC-CGAGCg -3'
miRNA:   3'- -GGGCGCGCGC---------------UCGCaGUa-CGcGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 3864 0.69 0.550405
Target:  5'- gCCCGCGCGCGucgcGCGcCGagGCcGCG-GCc -3'
miRNA:   3'- -GGGCGCGCGCu---CGCaGUa-CG-CGCuCG- -5'
25485 5' -59.9 NC_005336.1 + 3864 0.69 0.550405
Target:  5'- gCCCGCGCGCGucgcGCGcCGagGCcGCG-GCc -3'
miRNA:   3'- -GGGCGCGCGCu---CGCaGUa-CG-CGCuCG- -5'
25485 5' -59.9 NC_005336.1 + 3894 0.69 0.589479
Target:  5'- cCCCGCGcCGCGccagcagcAGCGgCAgccGCGCGuccAGCg -3'
miRNA:   3'- -GGGCGC-GCGC--------UCGCaGUa--CGCGC---UCG- -5'
25485 5' -59.9 NC_005336.1 + 3940 0.67 0.71735
Target:  5'- gCCGCG-GCGcAGCGcCGcGCGC-AGCa -3'
miRNA:   3'- gGGCGCgCGC-UCGCaGUaCGCGcUCG- -5'
25485 5' -59.9 NC_005336.1 + 4006 0.69 0.550405
Target:  5'- gCCCGCGCGCcuGcCGcCAgcaGCGCGcGCa -3'
miRNA:   3'- -GGGCGCGCGcuC-GCaGUa--CGCGCuCG- -5'
25485 5' -59.9 NC_005336.1 + 4055 0.66 0.773527
Target:  5'- gCCGCGCGCGGaCcaaGUGCuccaCGAGCa -3'
miRNA:   3'- gGGCGCGCGCUcGcagUACGc---GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.