miRNA display CGI


Results 1 - 20 of 575 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25485 5' -59.9 NC_005336.1 + 92941 0.76 0.243966
Target:  5'- gCCGCGCGCGAGCGagcugaaCAaGCGCGuGGUc -3'
miRNA:   3'- gGGCGCGCGCUCGCa------GUaCGCGC-UCG- -5'
25485 5' -59.9 NC_005336.1 + 57775 0.77 0.211752
Target:  5'- gCCGCGCGCGGGCaccUC-UGCGaGAGCa -3'
miRNA:   3'- gGGCGCGCGCUCGc--AGuACGCgCUCG- -5'
25485 5' -59.9 NC_005336.1 + 58823 0.77 0.216855
Target:  5'- uUCGCGCGCGAGCG-CGcccUGCGC-AGCc -3'
miRNA:   3'- gGGCGCGCGCUCGCaGU---ACGCGcUCG- -5'
25485 5' -59.9 NC_005336.1 + 88018 0.77 0.216855
Target:  5'- gUCCGUGCGgaUGAGCGUUuucuuuUGCGUGGGCg -3'
miRNA:   3'- -GGGCGCGC--GCUCGCAGu-----ACGCGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 15016 0.76 0.227376
Target:  5'- gCgGCGCGCGGGCGgcgUcgGCGCGcGCc -3'
miRNA:   3'- gGgCGCGCGCUCGCa--GuaCGCGCuCG- -5'
25485 5' -59.9 NC_005336.1 + 75548 0.76 0.232797
Target:  5'- -gCGCGCGUGucGCG-CGUGCGCGAGg -3'
miRNA:   3'- ggGCGCGCGCu-CGCaGUACGCGCUCg -5'
25485 5' -59.9 NC_005336.1 + 128267 0.76 0.238327
Target:  5'- gCCGCGCGCgugGAGCG-CGUGCGCc-GCa -3'
miRNA:   3'- gGGCGCGCG---CUCGCaGUACGCGcuCG- -5'
25485 5' -59.9 NC_005336.1 + 127042 0.76 0.243397
Target:  5'- gCCCGCGCGgGuacGCGccgcugcacaugcUCAUGCGCG-GCa -3'
miRNA:   3'- -GGGCGCGCgCu--CGC-------------AGUACGCGCuCG- -5'
25485 5' -59.9 NC_005336.1 + 67656 0.76 0.243966
Target:  5'- gCCGCGCGCaacaccAGCGUCuc-CGCGGGCg -3'
miRNA:   3'- gGGCGCGCGc-----UCGCAGuacGCGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 136442 0.77 0.211752
Target:  5'- aCCCGCaGgGCGAGgG-CAUGCacGCGAGCu -3'
miRNA:   3'- -GGGCG-CgCGCUCgCaGUACG--CGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 67710 0.77 0.19706
Target:  5'- aCUGCGCggcucgggaacaGCGcGCGcaUCAUGCGCGAGCg -3'
miRNA:   3'- gGGCGCG------------CGCuCGC--AGUACGCGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 99528 0.78 0.183265
Target:  5'- aCCGCGCGCcucGAuGCuUCGUGCGCGuGCg -3'
miRNA:   3'- gGGCGCGCG---CU-CGcAGUACGCGCuCG- -5'
25485 5' -59.9 NC_005336.1 + 9629 0.85 0.061611
Target:  5'- -aUGCGCGCGAGCGcggccUgGUGCGCGAGCg -3'
miRNA:   3'- ggGCGCGCGCUCGC-----AgUACGCGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 52064 0.84 0.072017
Target:  5'- gCCCGCGCGCGccuucguggacGCGgcacuggggcUCAUGCGCGAGCg -3'
miRNA:   3'- -GGGCGCGCGCu----------CGC----------AGUACGCGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 9369 0.82 0.098103
Target:  5'- gCCCGCGCGUGAGCGUgcucacCAcGCGCG-GCu -3'
miRNA:   3'- -GGGCGCGCGCUCGCA------GUaCGCGCuCG- -5'
25485 5' -59.9 NC_005336.1 + 9559 0.8 0.143283
Target:  5'- gCCGCGCGCG-GCGUU---CGCGAGCa -3'
miRNA:   3'- gGGCGCGCGCuCGCAGuacGCGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 50301 0.79 0.146892
Target:  5'- cCCUGCGCGCGGGCGcgCGUucGCGCGAc- -3'
miRNA:   3'- -GGGCGCGCGCUCGCa-GUA--CGCGCUcg -5'
25485 5' -59.9 NC_005336.1 + 135977 0.79 0.146892
Target:  5'- gCUGCGCGCG-GCGggCGcGCGCGGGCa -3'
miRNA:   3'- gGGCGCGCGCuCGCa-GUaCGCGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 73698 0.78 0.169915
Target:  5'- uUCCGCGgcaacguCGCGgaGGCgGUCAUGCGCGAGUa -3'
miRNA:   3'- -GGGCGC-------GCGC--UCG-CAGUACGCGCUCG- -5'
25485 5' -59.9 NC_005336.1 + 40572 0.78 0.183265
Target:  5'- uCCCGgGCGUGcGCGUCuUGCGCauGAGCc -3'
miRNA:   3'- -GGGCgCGCGCuCGCAGuACGCG--CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.