miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25486 3' -58 NC_005336.1 + 113445 0.66 0.812838
Target:  5'- cGGACUccGCGGCGCgCGcGCC-CgGCGa -3'
miRNA:   3'- aCCUGA--UGCCGUG-GCaCGGaGaCGUg -5'
25486 3' -58 NC_005336.1 + 6605 0.66 0.812838
Target:  5'- aUGcGuCcACGGCG-CGUGCgUCUGCGCc -3'
miRNA:   3'- -AC-CuGaUGCCGUgGCACGgAGACGUG- -5'
25486 3' -58 NC_005336.1 + 70425 0.66 0.812838
Target:  5'- cUGGACgUGCGGCACuCGcUGCC-C-GCGg -3'
miRNA:   3'- -ACCUG-AUGCCGUG-GC-ACGGaGaCGUg -5'
25486 3' -58 NC_005336.1 + 125690 0.66 0.812838
Target:  5'- aGGGCcugAUGGCguacugccGCaCGUGCCUCaugaGCGCg -3'
miRNA:   3'- aCCUGa--UGCCG--------UG-GCACGGAGa---CGUG- -5'
25486 3' -58 NC_005336.1 + 125847 0.66 0.812838
Target:  5'- gUGaACUACGugGCCGUGCUcaagacccacggUCUGCACg -3'
miRNA:   3'- -ACcUGAUGCcgUGGCACGG------------AGACGUG- -5'
25486 3' -58 NC_005336.1 + 65220 0.66 0.804019
Target:  5'- gGGcaaGCUGCGcGCGCgCGUGCCcaugUC-GCGCg -3'
miRNA:   3'- aCC---UGAUGC-CGUG-GCACGG----AGaCGUG- -5'
25486 3' -58 NC_005336.1 + 13533 0.66 0.804019
Target:  5'- cGGcCaGCGGCACCG-GCgUggGCACg -3'
miRNA:   3'- aCCuGaUGCCGUGGCaCGgAgaCGUG- -5'
25486 3' -58 NC_005336.1 + 41121 0.66 0.804019
Target:  5'- cGGACgagaaggGC-GCGCCGcUGCCgUgUGCGCg -3'
miRNA:   3'- aCCUGa------UGcCGUGGC-ACGG-AgACGUG- -5'
25486 3' -58 NC_005336.1 + 123211 0.66 0.804019
Target:  5'- cUGGACUGCGgguucgcgcGCGCCGUGgUguucCUGgACg -3'
miRNA:   3'- -ACCUGAUGC---------CGUGGCACgGa---GACgUG- -5'
25486 3' -58 NC_005336.1 + 71456 0.66 0.804019
Target:  5'- gGcGGCUuccuugagcGCGGCGCCcaccggcGCCUCUGCGu -3'
miRNA:   3'- aC-CUGA---------UGCCGUGGca-----CGGAGACGUg -5'
25486 3' -58 NC_005336.1 + 58119 0.66 0.804019
Target:  5'- aGGAgaGCGGCgacgGCCaGUGUCUgaacgaguggCUGCGCg -3'
miRNA:   3'- aCCUgaUGCCG----UGG-CACGGA----------GACGUG- -5'
25486 3' -58 NC_005336.1 + 125596 0.66 0.801342
Target:  5'- gUGGACauggUGCGGCACCagaacgugagcaagGUGCggCUCUggccGCGCg -3'
miRNA:   3'- -ACCUG----AUGCCGUGG--------------CACG--GAGA----CGUG- -5'
25486 3' -58 NC_005336.1 + 63744 0.66 0.795043
Target:  5'- -cGACgucgACGGCuCCGcgGCCUUcGCGCg -3'
miRNA:   3'- acCUGa---UGCCGuGGCa-CGGAGaCGUG- -5'
25486 3' -58 NC_005336.1 + 39548 0.66 0.78592
Target:  5'- uUGGccacguccACcACGcGCACCGUGCCgUCgaGCACc -3'
miRNA:   3'- -ACC--------UGaUGC-CGUGGCACGG-AGa-CGUG- -5'
25486 3' -58 NC_005336.1 + 73904 0.66 0.78592
Target:  5'- cGGGCcgcACGGCcucgcaccagaGCCGguaccgGCC-CUGCACu -3'
miRNA:   3'- aCCUGa--UGCCG-----------UGGCa-----CGGaGACGUG- -5'
25486 3' -58 NC_005336.1 + 12983 0.66 0.78592
Target:  5'- gUGGACgu-GGUAgCCGUGCC-C-GCACa -3'
miRNA:   3'- -ACCUGaugCCGU-GGCACGGaGaCGUG- -5'
25486 3' -58 NC_005336.1 + 8992 0.66 0.776658
Target:  5'- gUGGACggcGCGGCGCgCGUagcucGCCgCgaagGCGCg -3'
miRNA:   3'- -ACCUGa--UGCCGUG-GCA-----CGGaGa---CGUG- -5'
25486 3' -58 NC_005336.1 + 124963 0.66 0.776658
Target:  5'- gGGGC-ACGGCuuCGUGC-UCUGC-Cg -3'
miRNA:   3'- aCCUGaUGCCGugGCACGgAGACGuG- -5'
25486 3' -58 NC_005336.1 + 133300 0.66 0.776658
Target:  5'- -cGACcGCGGgGCCGUGaucguguucCCUCUGgCGCg -3'
miRNA:   3'- acCUGaUGCCgUGGCAC---------GGAGAC-GUG- -5'
25486 3' -58 NC_005336.1 + 72456 0.66 0.776658
Target:  5'- -cGACUACcuCACCGUGCgccggCUCUGCAa -3'
miRNA:   3'- acCUGAUGccGUGGCACG-----GAGACGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.