miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25486 3' -58 NC_005336.1 + 8992 0.66 0.776658
Target:  5'- gUGGACggcGCGGCGCgCGUagcucGCCgCgaagGCGCg -3'
miRNA:   3'- -ACCUGa--UGCCGUG-GCA-----CGGaGa---CGUG- -5'
25486 3' -58 NC_005336.1 + 133509 0.66 0.776658
Target:  5'- cGGGCacgugGCGGCcUCGgGCCUaUGCGCg -3'
miRNA:   3'- aCCUGa----UGCCGuGGCaCGGAgACGUG- -5'
25486 3' -58 NC_005336.1 + 130847 0.66 0.767266
Target:  5'- gUGGACUgccacgccACGGCGgccuUCGUGCUcCgGCACg -3'
miRNA:   3'- -ACCUGA--------UGCCGU----GGCACGGaGaCGUG- -5'
25486 3' -58 NC_005336.1 + 110819 0.66 0.767266
Target:  5'- -cGACacACGGCGCCGgacagGUCUgcgCUGCGCa -3'
miRNA:   3'- acCUGa-UGCCGUGGCa----CGGA---GACGUG- -5'
25486 3' -58 NC_005336.1 + 49942 0.66 0.767266
Target:  5'- gGGGCgguCGGCGCaGcGCaUCUGCGCg -3'
miRNA:   3'- aCCUGau-GCCGUGgCaCGgAGACGUG- -5'
25486 3' -58 NC_005336.1 + 65605 0.66 0.767266
Target:  5'- gUGGACgaaGcCGCCGUGCUcacagagCUGCGCg -3'
miRNA:   3'- -ACCUGaugCcGUGGCACGGa------GACGUG- -5'
25486 3' -58 NC_005336.1 + 23104 0.67 0.757755
Target:  5'- cGGACcccgGCGGCGCC-UGCCcCgcGUACg -3'
miRNA:   3'- aCCUGa---UGCCGUGGcACGGaGa-CGUG- -5'
25486 3' -58 NC_005336.1 + 14058 0.67 0.757755
Target:  5'- aUGG-CgGCGGCcgcGCCG-GCCUCgaGCACc -3'
miRNA:   3'- -ACCuGaUGCCG---UGGCaCGGAGa-CGUG- -5'
25486 3' -58 NC_005336.1 + 109955 0.67 0.757755
Target:  5'- cGGAgCUGCGGCGgcuucUCGacaGCCUCgaGCGCg -3'
miRNA:   3'- aCCU-GAUGCCGU-----GGCa--CGGAGa-CGUG- -5'
25486 3' -58 NC_005336.1 + 51417 0.67 0.757755
Target:  5'- cGGAUgGCGGCGCCGacgacGCCcguggUGCACc -3'
miRNA:   3'- aCCUGaUGCCGUGGCa----CGGag---ACGUG- -5'
25486 3' -58 NC_005336.1 + 122705 0.67 0.757755
Target:  5'- gUGuGCUACGGC-UCGUacGCC-CUGCACc -3'
miRNA:   3'- -ACcUGAUGCCGuGGCA--CGGaGACGUG- -5'
25486 3' -58 NC_005336.1 + 110411 0.67 0.748131
Target:  5'- cGGcCgcgGCGGCGgCGUcGCCgccgcauaUCUGCGCg -3'
miRNA:   3'- aCCuGa--UGCCGUgGCA-CGG--------AGACGUG- -5'
25486 3' -58 NC_005336.1 + 118378 0.67 0.748131
Target:  5'- cUGGAUgGCGGCAgCGaagGCCUCgaaGUGCc -3'
miRNA:   3'- -ACCUGaUGCCGUgGCa--CGGAGa--CGUG- -5'
25486 3' -58 NC_005336.1 + 123385 0.67 0.748131
Target:  5'- aUGGACgGCGaCGCCGUGCacgaUCUgagccgGCGCg -3'
miRNA:   3'- -ACCUGaUGCcGUGGCACGg---AGA------CGUG- -5'
25486 3' -58 NC_005336.1 + 52485 0.67 0.748131
Target:  5'- gUGGGCUccgcgcccggACGGCACaucUGCUgcCUGCACu -3'
miRNA:   3'- -ACCUGA----------UGCCGUGgc-ACGGa-GACGUG- -5'
25486 3' -58 NC_005336.1 + 5571 0.67 0.748131
Target:  5'- aGGucuaaucCUGCGGCACCGggagauCCUCUGguUg -3'
miRNA:   3'- aCCu------GAUGCCGUGGCac----GGAGACguG- -5'
25486 3' -58 NC_005336.1 + 64599 0.67 0.748131
Target:  5'- cGGGCUcCGGCcgcuggacgugGCCGUGUgUCUuGUGCa -3'
miRNA:   3'- aCCUGAuGCCG-----------UGGCACGgAGA-CGUG- -5'
25486 3' -58 NC_005336.1 + 62473 0.67 0.738405
Target:  5'- cUGGuGCUGCGGCACUGcgGCg--UGCGCg -3'
miRNA:   3'- -ACC-UGAUGCCGUGGCa-CGgagACGUG- -5'
25486 3' -58 NC_005336.1 + 15763 0.67 0.738405
Target:  5'- aGGGCggcgcgcACGGCGCgCGUGUgcUUGCGCa -3'
miRNA:   3'- aCCUGa------UGCCGUG-GCACGgaGACGUG- -5'
25486 3' -58 NC_005336.1 + 90671 0.67 0.738405
Target:  5'- aGGGCgagaccgcgACGGCGgUGUGCCggcggCUGC-Cg -3'
miRNA:   3'- aCCUGa--------UGCCGUgGCACGGa----GACGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.