miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25486 5' -56.3 NC_005336.1 + 44414 0.66 0.893
Target:  5'- cGGUGCcGC--UACGU-GGGCUGCCg -3'
miRNA:   3'- cCCAUGuUGuuGUGCGcCCCGACGGa -5'
25486 5' -56.3 NC_005336.1 + 71011 0.66 0.893
Target:  5'- --cUGCAACAACGCGCGcaaGCUGCgCUc -3'
miRNA:   3'- cccAUGUUGUUGUGCGCcc-CGACG-GA- -5'
25486 5' -56.3 NC_005336.1 + 30465 0.66 0.893
Target:  5'- gGGGUAUAACAACAUG-GcGGGCUu--- -3'
miRNA:   3'- -CCCAUGUUGUUGUGCgC-CCCGAcgga -5'
25486 5' -56.3 NC_005336.1 + 135879 0.66 0.89233
Target:  5'- ---cGCGGCGGCccgcuggACGCGcGGCUGCCg -3'
miRNA:   3'- cccaUGUUGUUG-------UGCGCcCCGACGGa -5'
25486 5' -56.3 NC_005336.1 + 121802 0.66 0.886203
Target:  5'- uGGUGCAguaccGCGGCaucgggcgcuucGCGCuGGGCUGCg- -3'
miRNA:   3'- cCCAUGU-----UGUUG------------UGCGcCCCGACGga -5'
25486 5' -56.3 NC_005336.1 + 62474 0.66 0.886203
Target:  5'- uGGUGCuGCGGCACuGCGGcGuGCgcGCCUu -3'
miRNA:   3'- cCCAUGuUGUUGUG-CGCC-C-CGa-CGGA- -5'
25486 5' -56.3 NC_005336.1 + 67809 0.66 0.886203
Target:  5'- cGGUcgaaACGAUGcACGCGCGcGGGCgcGCCg -3'
miRNA:   3'- cCCA----UGUUGU-UGUGCGC-CCCGa-CGGa -5'
25486 5' -56.3 NC_005336.1 + 85979 0.66 0.886203
Target:  5'- -cGUGCccguGGCGgacccGCGCGCGuGGCUGCCg -3'
miRNA:   3'- ccCAUG----UUGU-----UGUGCGCcCCGACGGa -5'
25486 5' -56.3 NC_005336.1 + 131019 0.66 0.886203
Target:  5'- cGGU-CGugGACACGcCGGaGcGCUGCUg -3'
miRNA:   3'- cCCAuGUugUUGUGC-GCC-C-CGACGGa -5'
25486 5' -56.3 NC_005336.1 + 116769 0.66 0.885511
Target:  5'- cGGGUAgAAgucCGugACGCGGuagucgcccagacGGCUGCUc -3'
miRNA:   3'- -CCCAUgUU---GUugUGCGCC-------------CCGACGGa -5'
25486 5' -56.3 NC_005336.1 + 123342 0.66 0.885511
Target:  5'- -cGUGCGugGGCG-GCGagaacucgguaacGGGCUGCCUg -3'
miRNA:   3'- ccCAUGUugUUGUgCGC-------------CCCGACGGA- -5'
25486 5' -56.3 NC_005336.1 + 84205 0.66 0.87918
Target:  5'- cGGGUACAugAGCACGCu---CUGCUc -3'
miRNA:   3'- -CCCAUGUugUUGUGCGccccGACGGa -5'
25486 5' -56.3 NC_005336.1 + 44802 0.66 0.87918
Target:  5'- cGGUguuuaagcacGCGGCGAUauACGCGGGGCgcgugGaCCg -3'
miRNA:   3'- cCCA----------UGUUGUUG--UGCGCCCCGa----C-GGa -5'
25486 5' -56.3 NC_005336.1 + 125054 0.66 0.87918
Target:  5'- cGGUACcGCAACuCGCGGucgccgguguGGCUGgCg -3'
miRNA:   3'- cCCAUGuUGUUGuGCGCC----------CCGACgGa -5'
25486 5' -56.3 NC_005336.1 + 135926 0.66 0.871936
Target:  5'- cGGGgccGCGgccucggcgcGCGACGCGCGcGGGC-GCUc -3'
miRNA:   3'- -CCCa--UGU----------UGUUGUGCGC-CCCGaCGGa -5'
25486 5' -56.3 NC_005336.1 + 3152 0.66 0.871936
Target:  5'- aGGGgaaucACAGCucCGCGCGGcGCaGCCg -3'
miRNA:   3'- -CCCa----UGUUGuuGUGCGCCcCGaCGGa -5'
25486 5' -56.3 NC_005336.1 + 3152 0.66 0.871936
Target:  5'- aGGGgaaucACAGCucCGCGCGGcGCaGCCg -3'
miRNA:   3'- -CCCa----UGUUGuuGUGCGCCcCGaCGGa -5'
25486 5' -56.3 NC_005336.1 + 135926 0.66 0.871936
Target:  5'- cGGGgccGCGgccucggcgcGCGACGCGCGcGGGC-GCUc -3'
miRNA:   3'- -CCCa--UGU----------UGUUGUGCGC-CCCGaCGGa -5'
25486 5' -56.3 NC_005336.1 + 14588 0.66 0.864474
Target:  5'- cGGUGCc-CAGCAUGCGcccGGGCggcaGCCa -3'
miRNA:   3'- cCCAUGuuGUUGUGCGC---CCCGa---CGGa -5'
25486 5' -56.3 NC_005336.1 + 45236 0.66 0.864474
Target:  5'- uGGUcuaaaacaGCGGCGGCGCGCGGGucccgaGCacggGCCg -3'
miRNA:   3'- cCCA--------UGUUGUUGUGCGCCC------CGa---CGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.