miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25486 5' -56.3 NC_005336.1 + 3152 0.66 0.871936
Target:  5'- aGGGgaaucACAGCucCGCGCGGcGCaGCCg -3'
miRNA:   3'- -CCCa----UGUUGuuGUGCGCCcCGaCGGa -5'
25486 5' -56.3 NC_005336.1 + 3152 0.66 0.871936
Target:  5'- aGGGgaaucACAGCucCGCGCGGcGCaGCCg -3'
miRNA:   3'- -CCCa----UGUUGuuGUGCGCCcCGaCGGa -5'
25486 5' -56.3 NC_005336.1 + 3510 0.69 0.711455
Target:  5'- cGGcaGCGGCGGCGcCGCGGGGCggaagagcgcGCCg -3'
miRNA:   3'- -CCcaUGUUGUUGU-GCGCCCCGa---------CGGa -5'
25486 5' -56.3 NC_005336.1 + 3510 0.69 0.711455
Target:  5'- cGGcaGCGGCGGCGcCGCGGGGCggaagagcgcGCCg -3'
miRNA:   3'- -CCcaUGUUGUUGU-GCGCCCCGa---------CGGa -5'
25486 5' -56.3 NC_005336.1 + 5741 0.68 0.806707
Target:  5'- cGGGU-CAGCAugGCGCGGcGCagGUCc -3'
miRNA:   3'- -CCCAuGUUGUugUGCGCCcCGa-CGGa -5'
25486 5' -56.3 NC_005336.1 + 6154 0.68 0.797753
Target:  5'- -aGUACcaguucuGCGGCACGCGGacGCUGCCc -3'
miRNA:   3'- ccCAUGu------UGUUGUGCGCCc-CGACGGa -5'
25486 5' -56.3 NC_005336.1 + 7820 0.72 0.548351
Target:  5'- aGGGUcgucguccgcGCAACGACugGCGGcagagcGCUGUCUg -3'
miRNA:   3'- -CCCA----------UGUUGUUGugCGCCc-----CGACGGA- -5'
25486 5' -56.3 NC_005336.1 + 7953 0.67 0.840848
Target:  5'- cGGGUGuguCGACAACGCGCc-GGCgaccGCCa -3'
miRNA:   3'- -CCCAU---GUUGUUGUGCGccCCGa---CGGa -5'
25486 5' -56.3 NC_005336.1 + 9439 0.71 0.599093
Target:  5'- cGGGUACGccagucggaaGCAGCGCGCGuccgcgggcaccGGGCUcgcGCCc -3'
miRNA:   3'- -CCCAUGU----------UGUUGUGCGC------------CCCGA---CGGa -5'
25486 5' -56.3 NC_005336.1 + 10404 0.69 0.711455
Target:  5'- cGGcGUcCAGCAGCGCGCgcacgacggcGGGGUccgUGCCg -3'
miRNA:   3'- -CC-CAuGUUGUUGUGCG----------CCCCG---ACGGa -5'
25486 5' -56.3 NC_005336.1 + 14588 0.66 0.864474
Target:  5'- cGGUGCc-CAGCAUGCGcccGGGCggcaGCCa -3'
miRNA:   3'- cCCAUGuuGUUGUGCGC---CCCGa---CGGa -5'
25486 5' -56.3 NC_005336.1 + 15024 0.68 0.797753
Target:  5'- cGGGcgGCGuCGGCGCGCGccccGGGC-GCCg -3'
miRNA:   3'- -CCCa-UGUuGUUGUGCGC----CCCGaCGGa -5'
25486 5' -56.3 NC_005336.1 + 15640 0.66 0.864474
Target:  5'- cGGaGCA--GACACGCGGccgcGGCUGCUc -3'
miRNA:   3'- cCCaUGUugUUGUGCGCC----CCGACGGa -5'
25486 5' -56.3 NC_005336.1 + 15775 0.67 0.82413
Target:  5'- ---cGCGACAGuCGCGgGuGGGUUGCCg -3'
miRNA:   3'- cccaUGUUGUU-GUGCgC-CCCGACGGa -5'
25486 5' -56.3 NC_005336.1 + 17472 0.74 0.470402
Target:  5'- ---aGCAGCucGCAgGCGGGGUUGCCg -3'
miRNA:   3'- cccaUGUUGu-UGUgCGCCCCGACGGa -5'
25486 5' -56.3 NC_005336.1 + 19674 0.7 0.660693
Target:  5'- -cGUACAGCcGC-CGCGGGaGgUGCCUg -3'
miRNA:   3'- ccCAUGUUGuUGuGCGCCC-CgACGGA- -5'
25486 5' -56.3 NC_005336.1 + 23181 0.67 0.844102
Target:  5'- cGGUACGugAACcccuuccaccgcuuCGCGGcGCUGCCc -3'
miRNA:   3'- cCCAUGUugUUGu-------------GCGCCcCGACGGa -5'
25486 5' -56.3 NC_005336.1 + 23447 0.67 0.832581
Target:  5'- gGGGUucacgcgcaucaGCAACccCACGCccaucgGGcGGCUGCCg -3'
miRNA:   3'- -CCCA------------UGUUGuuGUGCG------CC-CCGACGGa -5'
25486 5' -56.3 NC_005336.1 + 24059 0.68 0.779399
Target:  5'- -cGUACAcGCAGCgGCGCGGGuGCgccacgGCCUc -3'
miRNA:   3'- ccCAUGU-UGUUG-UGCGCCC-CGa-----CGGA- -5'
25486 5' -56.3 NC_005336.1 + 29592 0.67 0.82413
Target:  5'- uGGGUGC-GCuGC-UGCGGGcGCUGCg- -3'
miRNA:   3'- -CCCAUGuUGuUGuGCGCCC-CGACGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.