miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25487 3' -46 NC_005336.1 + 95027 0.66 0.999961
Target:  5'- gUUCAGACA-GUcgGUCAugGACGCGGCg -3'
miRNA:   3'- aGAGUUUGUaCGagCAGU--UUGCGUUG- -5'
25487 3' -46 NC_005336.1 + 112074 0.66 0.999961
Target:  5'- gCUCGAggucGCgGUGCUCcUCGAAgcgcCGCAGCa -3'
miRNA:   3'- aGAGUU----UG-UACGAGcAGUUU----GCGUUG- -5'
25487 3' -46 NC_005336.1 + 41912 0.66 0.999961
Target:  5'- gUCUCGcGCcgaggcGCUCGcgGAGCGCGGCg -3'
miRNA:   3'- -AGAGUuUGua----CGAGCagUUUGCGUUG- -5'
25487 3' -46 NC_005336.1 + 127760 0.66 0.999961
Target:  5'- --gCGGGCGUGUcCGUgAAcgcGCGCAACg -3'
miRNA:   3'- agaGUUUGUACGaGCAgUU---UGCGUUG- -5'
25487 3' -46 NC_005336.1 + 123752 0.66 0.999961
Target:  5'- --cCGAGC-UGCUCGcCGccggcugcGACGCGGCg -3'
miRNA:   3'- agaGUUUGuACGAGCaGU--------UUGCGUUG- -5'
25487 3' -46 NC_005336.1 + 98959 0.66 0.999961
Target:  5'- cCUCGccACcgGCgccgcCGUCGAGCGCuACa -3'
miRNA:   3'- aGAGUu-UGuaCGa----GCAGUUUGCGuUG- -5'
25487 3' -46 NC_005336.1 + 100903 0.66 0.999961
Target:  5'- cCUCGAGCGUgGC-CGUCAuaaGCAccaGCg -3'
miRNA:   3'- aGAGUUUGUA-CGaGCAGUuugCGU---UG- -5'
25487 3' -46 NC_005336.1 + 35560 0.66 0.999947
Target:  5'- -gUCGAGCGUGCgcgaggacaCGUUccGCGCGAUg -3'
miRNA:   3'- agAGUUUGUACGa--------GCAGuuUGCGUUG- -5'
25487 3' -46 NC_005336.1 + 135727 0.66 0.999946
Target:  5'- cUCUCAc-CAcccUGCUCGUgGAgcacuugguccgcGCGCGGCg -3'
miRNA:   3'- -AGAGUuuGU---ACGAGCAgUU-------------UGCGUUG- -5'
25487 3' -46 NC_005336.1 + 99250 0.66 0.999946
Target:  5'- ---gGAACGUGCUCGUgCGcuucggcGACGCGGa -3'
miRNA:   3'- agagUUUGUACGAGCA-GU-------UUGCGUUg -5'
25487 3' -46 NC_005336.1 + 6425 0.66 0.999941
Target:  5'- gCUCGAGCAcgaauuccacgacGC-CG-CGAGCGCAGCg -3'
miRNA:   3'- aGAGUUUGUa------------CGaGCaGUUUGCGUUG- -5'
25487 3' -46 NC_005336.1 + 59239 0.66 0.999931
Target:  5'- uUCUCGcccgcgcgcuucgcGGCGUGCUCGcUCGAccuuugaaaagccgcGgGCGACa -3'
miRNA:   3'- -AGAGU--------------UUGUACGAGC-AGUU---------------UgCGUUG- -5'
25487 3' -46 NC_005336.1 + 35940 0.66 0.999929
Target:  5'- gCUCAGGCAggagauggccUGCUUGgccugcGCGCAGCc -3'
miRNA:   3'- aGAGUUUGU----------ACGAGCaguu--UGCGUUG- -5'
25487 3' -46 NC_005336.1 + 64035 0.66 0.999929
Target:  5'- --gUggGCAUGCUCacgcuGCGCAACa -3'
miRNA:   3'- agaGuuUGUACGAGcaguuUGCGUUG- -5'
25487 3' -46 NC_005336.1 + 27950 0.66 0.999929
Target:  5'- gUCUaGAGCAUGCccUCGUaCGcGCGCGAg -3'
miRNA:   3'- -AGAgUUUGUACG--AGCA-GUuUGCGUUg -5'
25487 3' -46 NC_005336.1 + 78373 0.66 0.999929
Target:  5'- --aCGAGCGUcGCuUCGcggccgagaUCAAGCGCGGCg -3'
miRNA:   3'- agaGUUUGUA-CG-AGC---------AGUUUGCGUUG- -5'
25487 3' -46 NC_005336.1 + 28994 0.66 0.999916
Target:  5'- gUCUCGAccccgGCAuccUGCUCGcgCAguucucgcacaugaaGACGCGGCu -3'
miRNA:   3'- -AGAGUU-----UGU---ACGAGCa-GU---------------UUGCGUUG- -5'
25487 3' -46 NC_005336.1 + 15128 0.66 0.999906
Target:  5'- --gCGGACG-GCUCGcgCGggUGCAGCa -3'
miRNA:   3'- agaGUUUGUaCGAGCa-GUuuGCGUUG- -5'
25487 3' -46 NC_005336.1 + 66158 0.66 0.999906
Target:  5'- gUC-CAAGCGcgacCUCaaaGUCAAGCGCGACa -3'
miRNA:   3'- -AGaGUUUGUac--GAG---CAGUUUGCGUUG- -5'
25487 3' -46 NC_005336.1 + 71491 0.66 0.999906
Target:  5'- gCUgGGguACGUGCUCGU-GGGCgGCAACg -3'
miRNA:   3'- aGAgUU--UGUACGAGCAgUUUG-CGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.