miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25487 3' -46 NC_005336.1 + 131809 1.11 0.017513
Target:  5'- aUCUCAAACAUGCUCGUCAAACGCAACc -3'
miRNA:   3'- -AGAGUUUGUACGAGCAGUUUGCGUUG- -5'
25487 3' -46 NC_005336.1 + 54290 0.84 0.528811
Target:  5'- gUCUCGAGCGUGagCGUCGAugGCGACc -3'
miRNA:   3'- -AGAGUUUGUACgaGCAGUUugCGUUG- -5'
25487 3' -46 NC_005336.1 + 97381 0.8 0.758402
Target:  5'- aCUCcAGCA-GCUCGUCGuuGGCGCGGCa -3'
miRNA:   3'- aGAGuUUGUaCGAGCAGU--UUGCGUUG- -5'
25487 3' -46 NC_005336.1 + 71042 0.8 0.768717
Target:  5'- gCUCGGGCucgggGCUCGUCGcgucGCGCAGCa -3'
miRNA:   3'- aGAGUUUGua---CGAGCAGUu---UGCGUUG- -5'
25487 3' -46 NC_005336.1 + 71953 0.79 0.788904
Target:  5'- --gCGGcACGUGCUCGUgGAGCGCGACc -3'
miRNA:   3'- agaGUU-UGUACGAGCAgUUUGCGUUG- -5'
25487 3' -46 NC_005336.1 + 65024 0.79 0.798753
Target:  5'- gUCUCGAcuGCAUGCUCGccgCAcuCGCGGCu -3'
miRNA:   3'- -AGAGUU--UGUACGAGCa--GUuuGCGUUG- -5'
25487 3' -46 NC_005336.1 + 103548 0.79 0.798753
Target:  5'- gCUCGuggucgagaacGGCGUGCUCGUCAugGACGCGGa -3'
miRNA:   3'- aGAGU-----------UUGUACGAGCAGU--UUGCGUUg -5'
25487 3' -46 NC_005336.1 + 26874 0.76 0.893146
Target:  5'- aUCUCGAGCAggcGCUUGgcCAcGCGCAGCa -3'
miRNA:   3'- -AGAGUUUGUa--CGAGCa-GUuUGCGUUG- -5'
25487 3' -46 NC_005336.1 + 87358 0.76 0.919861
Target:  5'- -gUCGAGCAUGC-CGUgCAggUGCAGCc -3'
miRNA:   3'- agAGUUUGUACGaGCA-GUuuGCGUUG- -5'
25487 3' -46 NC_005336.1 + 47482 0.75 0.925839
Target:  5'- --aCGGGCAUGCUCGcC--GCGCAGCg -3'
miRNA:   3'- agaGUUUGUACGAGCaGuuUGCGUUG- -5'
25487 3' -46 NC_005336.1 + 132256 0.75 0.94208
Target:  5'- gUUUCAGAg--GCcggCGUCAAGCGCAACg -3'
miRNA:   3'- -AGAGUUUguaCGa--GCAGUUUGCGUUG- -5'
25487 3' -46 NC_005336.1 + 75750 0.75 0.946933
Target:  5'- cCUCAgcGAgGUGCUUGUU--GCGCAGCg -3'
miRNA:   3'- aGAGU--UUgUACGAGCAGuuUGCGUUG- -5'
25487 3' -46 NC_005336.1 + 120793 0.73 0.969785
Target:  5'- aCUCGAACcccggcuuccgGCUCGUCAcGCGCAc- -3'
miRNA:   3'- aGAGUUUGua---------CGAGCAGUuUGCGUug -5'
25487 3' -46 NC_005336.1 + 29472 0.73 0.973452
Target:  5'- gUCUCuGGCAgaaGCUCGUCAucgugaAGCGCcGCg -3'
miRNA:   3'- -AGAGuUUGUa--CGAGCAGU------UUGCGuUG- -5'
25487 3' -46 NC_005336.1 + 9068 0.73 0.976252
Target:  5'- gUCUCcagcgccagcGGCAUGCUCG-CGAuGCGCGACa -3'
miRNA:   3'- -AGAGu---------UUGUACGAGCaGUU-UGCGUUG- -5'
25487 3' -46 NC_005336.1 + 99357 0.72 0.981194
Target:  5'- cCUCcGGCGUGCgCGUCGcGCGCAc- -3'
miRNA:   3'- aGAGuUUGUACGaGCAGUuUGCGUug -5'
25487 3' -46 NC_005336.1 + 49672 0.72 0.983355
Target:  5'- gUCUCGGGCA-GCUCGgacgacUCGAGCGUgAGCa -3'
miRNA:   3'- -AGAGUUUGUaCGAGC------AGUUUGCG-UUG- -5'
25487 3' -46 NC_005336.1 + 36317 0.72 0.983355
Target:  5'- cCUCGuuCAUGCggUCGcgcaCGAGCGCGACg -3'
miRNA:   3'- aGAGUuuGUACG--AGCa---GUUUGCGUUG- -5'
25487 3' -46 NC_005336.1 + 125224 0.72 0.983355
Target:  5'- aUUCu-ACAUGCggcUGUCAGGCGCGAUg -3'
miRNA:   3'- aGAGuuUGUACGa--GCAGUUUGCGUUG- -5'
25487 3' -46 NC_005336.1 + 8395 0.72 0.983355
Target:  5'- cCUCGAaguGCAUGUuggCGUCucuGACGUAGCg -3'
miRNA:   3'- aGAGUU---UGUACGa--GCAGu--UUGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.