miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25487 3' -46 NC_005336.1 + 66158 0.66 0.999906
Target:  5'- gUC-CAAGCGcgacCUCaaaGUCAAGCGCGACa -3'
miRNA:   3'- -AGaGUUUGUac--GAG---CAGUUUGCGUUG- -5'
25487 3' -46 NC_005336.1 + 30258 0.66 0.999889
Target:  5'- cCUCGGGCGUGCucuacgugaacgacaUCGUCAccgcguGCGUcGCg -3'
miRNA:   3'- aGAGUUUGUACG---------------AGCAGUu-----UGCGuUG- -5'
25487 3' -46 NC_005336.1 + 101566 0.66 0.999876
Target:  5'- gCUCGgcGACGcGCgCGcCGGGCGCGGCg -3'
miRNA:   3'- aGAGU--UUGUaCGaGCaGUUUGCGUUG- -5'
25487 3' -46 NC_005336.1 + 92329 0.66 0.999876
Target:  5'- --gCGAGCAUGCcCGUCGcgGGcCGCGAUa -3'
miRNA:   3'- agaGUUUGUACGaGCAGU--UU-GCGUUG- -5'
25487 3' -46 NC_005336.1 + 48772 0.66 0.999876
Target:  5'- ---uGGACGUGCUCG-CGAAgGcCAGCa -3'
miRNA:   3'- agagUUUGUACGAGCaGUUUgC-GUUG- -5'
25487 3' -46 NC_005336.1 + 72560 0.66 0.999876
Target:  5'- ---uGGACGUGCUCuucCAGGCGCAGg -3'
miRNA:   3'- agagUUUGUACGAGca-GUUUGCGUUg -5'
25487 3' -46 NC_005336.1 + 89123 0.66 0.999865
Target:  5'- --aCGAGCAUGguCUCGUCGAaggacggaaacccgGCGCAGa -3'
miRNA:   3'- agaGUUUGUAC--GAGCAGUU--------------UGCGUUg -5'
25487 3' -46 NC_005336.1 + 64233 0.67 0.999838
Target:  5'- gUCUCcAGCGUGgaguucucCUCGcgCAcGCGCGACa -3'
miRNA:   3'- -AGAGuUUGUAC--------GAGCa-GUuUGCGUUG- -5'
25487 3' -46 NC_005336.1 + 130141 0.67 0.999838
Target:  5'- cCgcgCAGGC--GCUC-UCGGACGCAGCg -3'
miRNA:   3'- aGa--GUUUGuaCGAGcAGUUUGCGUUG- -5'
25487 3' -46 NC_005336.1 + 59175 0.67 0.999838
Target:  5'- cCUCGcgcACAUGCgcgCGcgCAAGCGCGccGCg -3'
miRNA:   3'- aGAGUu--UGUACGa--GCa-GUUUGCGU--UG- -5'
25487 3' -46 NC_005336.1 + 52550 0.67 0.999838
Target:  5'- gCUCAAguGgGUGCUCaUCGAcggGCGCAAg -3'
miRNA:   3'- aGAGUU--UgUACGAGcAGUU---UGCGUUg -5'
25487 3' -46 NC_005336.1 + 109654 0.67 0.999838
Target:  5'- gCUCGAGCAcgGCgaggaaGUC--GCGCAGCu -3'
miRNA:   3'- aGAGUUUGUa-CGag----CAGuuUGCGUUG- -5'
25487 3' -46 NC_005336.1 + 33687 0.67 0.999838
Target:  5'- aCUUGAGCcgGUUCG-CGAGCGCc-- -3'
miRNA:   3'- aGAGUUUGuaCGAGCaGUUUGCGuug -5'
25487 3' -46 NC_005336.1 + 12787 0.67 0.999838
Target:  5'- gUCUCGcGCGUGgUCGccgcgcccgCGGGCGUGACg -3'
miRNA:   3'- -AGAGUuUGUACgAGCa--------GUUUGCGUUG- -5'
25487 3' -46 NC_005336.1 + 70127 0.67 0.999838
Target:  5'- cCUCGAcACGccGCUgGUCAucgacuACGCGACg -3'
miRNA:   3'- aGAGUU-UGUa-CGAgCAGUu-----UGCGUUG- -5'
25487 3' -46 NC_005336.1 + 104314 0.67 0.999833
Target:  5'- aCUCGGACAUcuacgccGCgcgCGUgGAGCGCGuGCa -3'
miRNA:   3'- aGAGUUUGUA-------CGa--GCAgUUUGCGU-UG- -5'
25487 3' -46 NC_005336.1 + 7813 0.67 0.999789
Target:  5'- --gCGGACAagGgUCGUCGuccGCGCAACg -3'
miRNA:   3'- agaGUUUGUa-CgAGCAGUu--UGCGUUG- -5'
25487 3' -46 NC_005336.1 + 89034 0.67 0.999789
Target:  5'- gCUCGGuuuCGUaGCgCGUCAugguGCGCGGCa -3'
miRNA:   3'- aGAGUUu--GUA-CGaGCAGUu---UGCGUUG- -5'
25487 3' -46 NC_005336.1 + 64607 0.67 0.999789
Target:  5'- gCUCAAGCGcUGCUCGcUgGAguggguGCGCGAg -3'
miRNA:   3'- aGAGUUUGU-ACGAGC-AgUU------UGCGUUg -5'
25487 3' -46 NC_005336.1 + 37545 0.67 0.999789
Target:  5'- uUCUCGAugGacUGCUUGUUgaugaAGACGCcGCc -3'
miRNA:   3'- -AGAGUUugU--ACGAGCAG-----UUUGCGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.