miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25487 5' -58.8 NC_005336.1 + 79974 0.65 0.826878
Target:  5'- aCGCUGGCGCGccgcaCGGCGucaucgcCGCCCa -3'
miRNA:   3'- aGCGGCCGCGCaaca-GCUGU-------GUGGGc -5'
25487 5' -58.8 NC_005336.1 + 125071 0.66 0.822741
Target:  5'- gUCGCCGGUGUGgcuggCGGCagucuucgccacgcgGCACCuCGa -3'
miRNA:   3'- -AGCGGCCGCGCaaca-GCUG---------------UGUGG-GC- -5'
25487 5' -58.8 NC_005336.1 + 32349 0.66 0.819401
Target:  5'- gCGCCGcGCGCGccucCGuCACGCUCGc -3'
miRNA:   3'- aGCGGC-CGCGCaacaGCuGUGUGGGC- -5'
25487 5' -58.8 NC_005336.1 + 104227 0.66 0.819401
Target:  5'- aCGCCaucGCGCGgaacgUGUCcucgcGCACGCUCGa -3'
miRNA:   3'- aGCGGc--CGCGCa----ACAGc----UGUGUGGGC- -5'
25487 5' -58.8 NC_005336.1 + 66960 0.66 0.818562
Target:  5'- cUUGCUGGUcacgaucGCGaagGUCuuGGCGCGCCCGu -3'
miRNA:   3'- -AGCGGCCG-------CGCaa-CAG--CUGUGUGGGC- -5'
25487 5' -58.8 NC_005336.1 + 65454 0.66 0.810941
Target:  5'- gCGCCGGUGCcg-GUCaAUGCGCCgGu -3'
miRNA:   3'- aGCGGCCGCGcaaCAGcUGUGUGGgC- -5'
25487 5' -58.8 NC_005336.1 + 87658 0.66 0.810941
Target:  5'- aUCGuUCGGCGCGaUGUagCGcGCGCGCuCCGc -3'
miRNA:   3'- -AGC-GGCCGCGCaACA--GC-UGUGUG-GGC- -5'
25487 5' -58.8 NC_005336.1 + 126698 0.66 0.810941
Target:  5'- cCGUCGcGCGCGUgcaCGGCACGCggcgCCGc -3'
miRNA:   3'- aGCGGC-CGCGCAacaGCUGUGUG----GGC- -5'
25487 5' -58.8 NC_005336.1 + 87933 0.66 0.810941
Target:  5'- aCuCCGGCGCGgaggUGUCcgccGCGCGCgCCa -3'
miRNA:   3'- aGcGGCCGCGCa---ACAGc---UGUGUG-GGc -5'
25487 5' -58.8 NC_005336.1 + 71497 0.66 0.810941
Target:  5'- cUGCCGcGCGCGccagcaCG-CACGCCCGc -3'
miRNA:   3'- aGCGGC-CGCGCaaca--GCuGUGUGGGC- -5'
25487 5' -58.8 NC_005336.1 + 99213 0.66 0.802326
Target:  5'- gCGCCcGCGCGgcucaUG-CGcaagacgcGCACGCCCGg -3'
miRNA:   3'- aGCGGcCGCGCa----ACaGC--------UGUGUGGGC- -5'
25487 5' -58.8 NC_005336.1 + 42298 0.66 0.802326
Target:  5'- aCGCCGGCaaGUcGUgCGGCuGCGCCuCGa -3'
miRNA:   3'- aGCGGCCGcgCAaCA-GCUG-UGUGG-GC- -5'
25487 5' -58.8 NC_005336.1 + 124879 0.66 0.802326
Target:  5'- gCGCCGGCGCccUGcgCGACACGuguucacggUCUGg -3'
miRNA:   3'- aGCGGCCGCGcaACa-GCUGUGU---------GGGC- -5'
25487 5' -58.8 NC_005336.1 + 105608 0.66 0.802326
Target:  5'- -aGCCGGCGUG----CGAUAgGCCCa -3'
miRNA:   3'- agCGGCCGCGCaacaGCUGUgUGGGc -5'
25487 5' -58.8 NC_005336.1 + 20330 0.66 0.802326
Target:  5'- gCGUCGGCGuCGUUGcUGGCGCcacaaACCuCGa -3'
miRNA:   3'- aGCGGCCGC-GCAACaGCUGUG-----UGG-GC- -5'
25487 5' -58.8 NC_005336.1 + 9812 0.66 0.802326
Target:  5'- cUCGUgcagCGGCGUGUUGcCGAUucgguuccGCGCUCGc -3'
miRNA:   3'- -AGCG----GCCGCGCAACaGCUG--------UGUGGGC- -5'
25487 5' -58.8 NC_005336.1 + 10094 0.66 0.802326
Target:  5'- gUGCCcgGGUGCGUg---GACAUGCCCGu -3'
miRNA:   3'- aGCGG--CCGCGCAacagCUGUGUGGGC- -5'
25487 5' -58.8 NC_005336.1 + 80439 0.66 0.802326
Target:  5'- cCGgCGGCGCGcagGcCGACGC-CCgCGg -3'
miRNA:   3'- aGCgGCCGCGCaa-CaGCUGUGuGG-GC- -5'
25487 5' -58.8 NC_005336.1 + 54061 0.66 0.793565
Target:  5'- -gGCaGGCGCGUgucgcggccggUGUCGAcCACgGCCUGg -3'
miRNA:   3'- agCGgCCGCGCA-----------ACAGCU-GUG-UGGGC- -5'
25487 5' -58.8 NC_005336.1 + 76767 0.66 0.793565
Target:  5'- gCGCCGcaGCGCGUaGUCGAUguaggcagcguGCGCgCUGg -3'
miRNA:   3'- aGCGGC--CGCGCAaCAGCUG-----------UGUG-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.