miRNA display CGI


Results 1 - 20 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25488 3' -57.2 NC_005336.1 + 47950 0.66 0.859573
Target:  5'- uCGCcaUGGCCGcaaACguagacGAGCCGCgcgaGUGCu -3'
miRNA:   3'- -GUG--ACCGGC---UGaa----CUCGGCGag--CACG- -5'
25488 3' -57.2 NC_005336.1 + 119719 0.66 0.859573
Target:  5'- ---aGGCCGGC--GAGCCGC-CGaGCc -3'
miRNA:   3'- gugaCCGGCUGaaCUCGGCGaGCaCG- -5'
25488 3' -57.2 NC_005336.1 + 42335 0.66 0.859573
Target:  5'- gCGCUGGUCGuCaagGAGUCGCgCGcGCu -3'
miRNA:   3'- -GUGACCGGCuGaa-CUCGGCGaGCaCG- -5'
25488 3' -57.2 NC_005336.1 + 97435 0.66 0.858806
Target:  5'- gACUucuGCCGcGCggUGAGCCggcaguuugacguGCUCGUGCu -3'
miRNA:   3'- gUGAc--CGGC-UGa-ACUCGG-------------CGAGCACG- -5'
25488 3' -57.2 NC_005336.1 + 121338 0.66 0.851813
Target:  5'- uGCUcGcGCCGGCggcgaggGAGUCGCUUG-GCu -3'
miRNA:   3'- gUGA-C-CGGCUGaa-----CUCGGCGAGCaCG- -5'
25488 3' -57.2 NC_005336.1 + 106771 0.66 0.843854
Target:  5'- -cCUGGgCGcGCaUGGGCCGUUCuUGCg -3'
miRNA:   3'- guGACCgGC-UGaACUCGGCGAGcACG- -5'
25488 3' -57.2 NC_005336.1 + 113890 0.66 0.843854
Target:  5'- aCGCUGGUCGGCgUG-GUCGuCUCGgacaaccgGCu -3'
miRNA:   3'- -GUGACCGGCUGaACuCGGC-GAGCa-------CG- -5'
25488 3' -57.2 NC_005336.1 + 103828 0.66 0.843854
Target:  5'- uGCUGGCCacGCUgcuGCCGaUCGUGUc -3'
miRNA:   3'- gUGACCGGc-UGAacuCGGCgAGCACG- -5'
25488 3' -57.2 NC_005336.1 + 101421 0.66 0.835703
Target:  5'- gCGgUGGCgGACgc-GGCCGCgcgCGUGg -3'
miRNA:   3'- -GUgACCGgCUGaacUCGGCGa--GCACg -5'
25488 3' -57.2 NC_005336.1 + 116415 0.66 0.835703
Target:  5'- gGCUGaacagCGGCUUGuAGUCGCcCGUGCg -3'
miRNA:   3'- gUGACcg---GCUGAAC-UCGGCGaGCACG- -5'
25488 3' -57.2 NC_005336.1 + 74753 0.66 0.835703
Target:  5'- cCACcgaGGCCGcCUU-AGCCGCgaGUGCg -3'
miRNA:   3'- -GUGa--CCGGCuGAAcUCGGCGagCACG- -5'
25488 3' -57.2 NC_005336.1 + 71319 0.66 0.835703
Target:  5'- aGCaUGGCCGGgUUcucgcaGAGCCGCguccgCGgcgGCg -3'
miRNA:   3'- gUG-ACCGGCUgAA------CUCGGCGa----GCa--CG- -5'
25488 3' -57.2 NC_005336.1 + 131390 0.66 0.830724
Target:  5'- cCGCUGGCgGuGCUgcugGAguccgcgagagcgacGCCggaGCUCGUGCg -3'
miRNA:   3'- -GUGACCGgC-UGAa---CU---------------CGG---CGAGCACG- -5'
25488 3' -57.2 NC_005336.1 + 89320 0.66 0.827368
Target:  5'- cCACgGGCUcuacgGAGCCGUaCGUGCa -3'
miRNA:   3'- -GUGaCCGGcugaaCUCGGCGaGCACG- -5'
25488 3' -57.2 NC_005336.1 + 45206 0.66 0.827368
Target:  5'- uGCUGGacuCCGcCgcgGAGCCGC-CGUGg -3'
miRNA:   3'- gUGACC---GGCuGaa-CUCGGCGaGCACg -5'
25488 3' -57.2 NC_005336.1 + 36553 0.66 0.827368
Target:  5'- cCGCUGGgCG---UGAGCCGCgUCGcggGCu -3'
miRNA:   3'- -GUGACCgGCugaACUCGGCG-AGCa--CG- -5'
25488 3' -57.2 NC_005336.1 + 128261 0.66 0.827368
Target:  5'- gCGCUGGCCGcgcGCgugGAGCg---CGUGCg -3'
miRNA:   3'- -GUGACCGGC---UGaa-CUCGgcgaGCACG- -5'
25488 3' -57.2 NC_005336.1 + 9499 0.66 0.827368
Target:  5'- aCGCUGuuucGCCGACgggcgUG-GUCGCUCGcaGCg -3'
miRNA:   3'- -GUGAC----CGGCUGa----ACuCGGCGAGCa-CG- -5'
25488 3' -57.2 NC_005336.1 + 70178 0.66 0.827368
Target:  5'- gCACaGuGCCG-CagGAGCCGCUCGcgaaGCg -3'
miRNA:   3'- -GUGaC-CGGCuGaaCUCGGCGAGCa---CG- -5'
25488 3' -57.2 NC_005336.1 + 62134 0.66 0.818855
Target:  5'- -cCUGGCgCGACUcgcUG-GCCGUgcccuuccgCGUGCu -3'
miRNA:   3'- guGACCG-GCUGA---ACuCGGCGa--------GCACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.