miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25488 3' -57.2 NC_005336.1 + 3221 0.67 0.810174
Target:  5'- cCGCcgUGGCCGAgUUGuAGCCGC-CGa-- -3'
miRNA:   3'- -GUG--ACCGGCUgAAC-UCGGCGaGCacg -5'
25488 3' -57.2 NC_005336.1 + 3221 0.67 0.810174
Target:  5'- cCGCcgUGGCCGAgUUGuAGCCGC-CGa-- -3'
miRNA:   3'- -GUG--ACCGGCUgAAC-UCGGCGaGCacg -5'
25488 3' -57.2 NC_005336.1 + 6273 0.67 0.791428
Target:  5'- gCGCcGGCCGcggucacGC-UGAGCgCGCgCGUGCu -3'
miRNA:   3'- -GUGaCCGGC-------UGaACUCG-GCGaGCACG- -5'
25488 3' -57.2 NC_005336.1 + 9499 0.66 0.827368
Target:  5'- aCGCUGuuucGCCGACgggcgUG-GUCGCUCGcaGCg -3'
miRNA:   3'- -GUGAC----CGGCUGa----ACuCGGCGAGCa-CG- -5'
25488 3' -57.2 NC_005336.1 + 11981 0.68 0.735651
Target:  5'- gCGCaGGCCGGCggguUGAacacgGCCGCgagGUGCa -3'
miRNA:   3'- -GUGaCCGGCUGa---ACU-----CGGCGag-CACG- -5'
25488 3' -57.2 NC_005336.1 + 15115 0.68 0.764521
Target:  5'- gCACUGGCUGGCcgcgGA-CgGCUCGcGCg -3'
miRNA:   3'- -GUGACCGGCUGaa--CUcGgCGAGCaCG- -5'
25488 3' -57.2 NC_005336.1 + 19083 0.68 0.755002
Target:  5'- -cCUGGCCGGCgcgGAugCGCUCGaGCg -3'
miRNA:   3'- guGACCGGCUGaa-CUcgGCGAGCaCG- -5'
25488 3' -57.2 NC_005336.1 + 21472 0.69 0.662518
Target:  5'- uGCUGGCCGACgcGcgcuucauggagguGGCCGCgCGcGCg -3'
miRNA:   3'- gUGACCGGCUGaaC--------------UCGGCGaGCaCG- -5'
25488 3' -57.2 NC_005336.1 + 32764 0.67 0.773922
Target:  5'- gCGCUGGCUGAaguu-GCUGUuuaUCGUGCc -3'
miRNA:   3'- -GUGACCGGCUgaacuCGGCG---AGCACG- -5'
25488 3' -57.2 NC_005336.1 + 33675 0.71 0.583986
Target:  5'- gCGCgGGCggCGACUUGAGCCgGUUCGcgaGCg -3'
miRNA:   3'- -GUGaCCG--GCUGAACUCGG-CGAGCa--CG- -5'
25488 3' -57.2 NC_005336.1 + 36553 0.66 0.827368
Target:  5'- cCGCUGGgCG---UGAGCCGCgUCGcggGCu -3'
miRNA:   3'- -GUGACCgGCugaACUCGGCG-AGCa--CG- -5'
25488 3' -57.2 NC_005336.1 + 39170 0.67 0.810174
Target:  5'- ---aGGCCaGACaccccGGGCUGCUgGUGCg -3'
miRNA:   3'- gugaCCGG-CUGaa---CUCGGCGAgCACG- -5'
25488 3' -57.2 NC_005336.1 + 39365 0.71 0.55376
Target:  5'- --aUGGCCGGCggcaccgcGAGCaCGCgCGUGCg -3'
miRNA:   3'- gugACCGGCUGaa------CUCG-GCGaGCACG- -5'
25488 3' -57.2 NC_005336.1 + 39541 0.7 0.645175
Target:  5'- aCGCUGcCCGAC--GAcCUGCUCGUGCa -3'
miRNA:   3'- -GUGACcGGCUGaaCUcGGCGAGCACG- -5'
25488 3' -57.2 NC_005336.1 + 40635 0.69 0.664554
Target:  5'- cCGCUGGCaGAgUUGAaggcggcGCCGCgcacccaggCGUGCg -3'
miRNA:   3'- -GUGACCGgCUgAACU-------CGGCGa--------GCACG- -5'
25488 3' -57.2 NC_005336.1 + 42335 0.66 0.859573
Target:  5'- gCGCUGGUCGuCaagGAGUCGCgCGcGCu -3'
miRNA:   3'- -GUGACCGGCuGaa-CUCGGCGaGCaCG- -5'
25488 3' -57.2 NC_005336.1 + 42386 0.7 0.645175
Target:  5'- gCGgUGGUCGAC---GGCUGCUgCGUGCg -3'
miRNA:   3'- -GUgACCGGCUGaacUCGGCGA-GCACG- -5'
25488 3' -57.2 NC_005336.1 + 44108 0.68 0.764521
Target:  5'- uGCaUGGCCuGGCUgcgcacGGGCCGCUaCGcgGCg -3'
miRNA:   3'- gUG-ACCGG-CUGAa-----CUCGGCGA-GCa-CG- -5'
25488 3' -57.2 NC_005336.1 + 45020 0.67 0.773922
Target:  5'- uCGC-GGCCGACgc-GGCCuucgaGCUCGUGg -3'
miRNA:   3'- -GUGaCCGGCUGaacUCGG-----CGAGCACg -5'
25488 3' -57.2 NC_005336.1 + 45206 0.66 0.827368
Target:  5'- uGCUGGacuCCGcCgcgGAGCCGC-CGUGg -3'
miRNA:   3'- gUGACC---GGCuGaa-CUCGGCGaGCACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.