miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25488 3' -57.2 NC_005336.1 + 92538 0.68 0.71594
Target:  5'- cCGCUGccGCCgGACgaagagGAGCCGgaCUCGUGUg -3'
miRNA:   3'- -GUGAC--CGG-CUGaa----CUCGGC--GAGCACG- -5'
25488 3' -57.2 NC_005336.1 + 130539 0.7 0.64926
Target:  5'- gGCUGGCCGAgagccggacgacaguCUaccgcGcGCCGCUcCGUGCa -3'
miRNA:   3'- gUGACCGGCU---------------GAa----CuCGGCGA-GCACG- -5'
25488 3' -57.2 NC_005336.1 + 123421 0.69 0.655383
Target:  5'- -cCUGGaCGuggucGAGCUGCUCGUGCa -3'
miRNA:   3'- guGACCgGCugaa-CUCGGCGAGCACG- -5'
25488 3' -57.2 NC_005336.1 + 100266 0.69 0.659461
Target:  5'- gACgUGGCCaagcugGACUgGAGCCGCgacugggagaagcgCGUGCa -3'
miRNA:   3'- gUG-ACCGG------CUGAaCUCGGCGa-------------GCACG- -5'
25488 3' -57.2 NC_005336.1 + 21472 0.69 0.662518
Target:  5'- uGCUGGCCGACgcGcgcuucauggagguGGCCGCgCGcGCg -3'
miRNA:   3'- gUGACCGGCUGaaC--------------UCGGCGaGCaCG- -5'
25488 3' -57.2 NC_005336.1 + 81683 0.69 0.675735
Target:  5'- aCACUGGCCGuc----GCCGCUCuccUGCg -3'
miRNA:   3'- -GUGACCGGCugaacuCGGCGAGc--ACG- -5'
25488 3' -57.2 NC_005336.1 + 54608 0.69 0.685861
Target:  5'- aCAC-GGCgGACgUG-GCCGCgcucagCGUGCa -3'
miRNA:   3'- -GUGaCCGgCUGaACuCGGCGa-----GCACG- -5'
25488 3' -57.2 NC_005336.1 + 132067 0.69 0.705973
Target:  5'- aCACcGGCCG---UGAGCgCGCuggUCGUGCu -3'
miRNA:   3'- -GUGaCCGGCugaACUCG-GCG---AGCACG- -5'
25488 3' -57.2 NC_005336.1 + 136006 0.68 0.71594
Target:  5'- gGCUGGCCGcggcGCUggcggccgcGGGCCGCgCG-GCg -3'
miRNA:   3'- gUGACCGGC----UGAa--------CUCGGCGaGCaCG- -5'
25488 3' -57.2 NC_005336.1 + 42386 0.7 0.645175
Target:  5'- gCGgUGGUCGAC---GGCUGCUgCGUGCg -3'
miRNA:   3'- -GUgACCGGCUGaacUCGGCGA-GCACG- -5'
25488 3' -57.2 NC_005336.1 + 39541 0.7 0.645175
Target:  5'- aCGCUGcCCGAC--GAcCUGCUCGUGCa -3'
miRNA:   3'- -GUGACcGGCUGaaCUcGGCGAGCACG- -5'
25488 3' -57.2 NC_005336.1 + 88930 0.7 0.608398
Target:  5'- uCugUGGCCGAggcCUUcgacguccgcgccgaGAGCgGgCUCGUGCg -3'
miRNA:   3'- -GugACCGGCU---GAA---------------CUCGgC-GAGCACG- -5'
25488 3' -57.2 NC_005336.1 + 93492 0.77 0.256794
Target:  5'- gUACUGcGgCGACcugUUGuGCCGCUCGUGCu -3'
miRNA:   3'- -GUGAC-CgGCUG---AACuCGGCGAGCACG- -5'
25488 3' -57.2 NC_005336.1 + 135913 0.73 0.439053
Target:  5'- uGCUGGCgCGGCgcgGGGCCGCggccUCG-GCg -3'
miRNA:   3'- gUGACCG-GCUGaa-CUCGGCG----AGCaCG- -5'
25488 3' -57.2 NC_005336.1 + 97163 0.72 0.48536
Target:  5'- uGCUGGCCGc---GGGCCGCgcCGUGUa -3'
miRNA:   3'- gUGACCGGCugaaCUCGGCGa-GCACG- -5'
25488 3' -57.2 NC_005336.1 + 45269 0.72 0.533867
Target:  5'- gCACgGGCCGcgccACUUGcAGCCGCUgcUGCa -3'
miRNA:   3'- -GUGaCCGGC----UGAAC-UCGGCGAgcACG- -5'
25488 3' -57.2 NC_005336.1 + 68269 0.71 0.573867
Target:  5'- -cCUGGCCuggGGCgcgcgcgaUGAGCCGCUgcgggCGUGCg -3'
miRNA:   3'- guGACCGG---CUGa-------ACUCGGCGA-----GCACG- -5'
25488 3' -57.2 NC_005336.1 + 33675 0.71 0.583986
Target:  5'- gCGCgGGCggCGACUUGAGCCgGUUCGcgaGCg -3'
miRNA:   3'- -GUGaCCG--GCUGAACUCGG-CGAGCa--CG- -5'
25488 3' -57.2 NC_005336.1 + 51829 0.7 0.594139
Target:  5'- gCGCUGuCCGACgacGAGgCGCUCG-GCg -3'
miRNA:   3'- -GUGACcGGCUGaa-CUCgGCGAGCaCG- -5'
25488 3' -57.2 NC_005336.1 + 103523 0.7 0.60432
Target:  5'- gCGCgGGCCGGCUcauccgcccGCUGCUCGUGg -3'
miRNA:   3'- -GUGaCCGGCUGAacu------CGGCGAGCACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.