miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25488 5' -53.9 NC_005336.1 + 120270 0.66 0.962086
Target:  5'- aGCGCUCGuG-GcCUGCUUGUUGgcgGCg -3'
miRNA:   3'- -CGCGGGCuCaCuGACGAGUAGCaa-CG- -5'
25488 5' -53.9 NC_005336.1 + 40749 0.66 0.962086
Target:  5'- cGCGCuCCGAGaUGGCgUGCagCA-CGUcGCg -3'
miRNA:   3'- -CGCG-GGCUC-ACUG-ACGa-GUaGCAaCG- -5'
25488 5' -53.9 NC_005336.1 + 62468 0.66 0.962086
Target:  5'- gGCGCCUG-GUG-CUGCggCAcugCGgcgUGCg -3'
miRNA:   3'- -CGCGGGCuCACuGACGa-GUa--GCa--ACG- -5'
25488 5' -53.9 NC_005336.1 + 86596 0.66 0.958469
Target:  5'- cCGCgUGuuGUGGCgGUUCAUCGUgcugGCg -3'
miRNA:   3'- cGCGgGCu-CACUGaCGAGUAGCAa---CG- -5'
25488 5' -53.9 NC_005336.1 + 10201 0.66 0.950541
Target:  5'- uCGCUCG-GUGACguuCUCGUCGaagGCg -3'
miRNA:   3'- cGCGGGCuCACUGac-GAGUAGCaa-CG- -5'
25488 5' -53.9 NC_005336.1 + 80250 0.66 0.950541
Target:  5'- cGCGCCCucccuGUGgucGCUGCUCGccaCGUgGCu -3'
miRNA:   3'- -CGCGGGcu---CAC---UGACGAGUa--GCAaCG- -5'
25488 5' -53.9 NC_005336.1 + 44278 0.66 0.950541
Target:  5'- cGCGCCgGAGUG-C-GCUugCGUCGcagGCa -3'
miRNA:   3'- -CGCGGgCUCACuGaCGA--GUAGCaa-CG- -5'
25488 5' -53.9 NC_005336.1 + 123417 0.66 0.950541
Target:  5'- cGCGCCUGGacGUGgucgaGCUGCUCGUgcagGCg -3'
miRNA:   3'- -CGCGGGCU--CAC-----UGACGAGUAgcaaCG- -5'
25488 5' -53.9 NC_005336.1 + 103197 0.66 0.950541
Target:  5'- cGUGCCCGAGcgcgGGCcGCagGUCGg-GCu -3'
miRNA:   3'- -CGCGGGCUCa---CUGaCGagUAGCaaCG- -5'
25488 5' -53.9 NC_005336.1 + 14600 0.66 0.946222
Target:  5'- uGCGCCCGGGcGGCaGC-CAgcUC-UUGCg -3'
miRNA:   3'- -CGCGGGCUCaCUGaCGaGU--AGcAACG- -5'
25488 5' -53.9 NC_005336.1 + 47330 0.66 0.945777
Target:  5'- cCGUCCGAGUGcugcacggugcgcGCgagcaGCUUGUCGUUGa -3'
miRNA:   3'- cGCGGGCUCAC-------------UGa----CGAGUAGCAACg -5'
25488 5' -53.9 NC_005336.1 + 120922 0.66 0.941662
Target:  5'- gGCGCUCGAG-GGCggGUUCggCGacgUGCu -3'
miRNA:   3'- -CGCGGGCUCaCUGa-CGAGuaGCa--ACG- -5'
25488 5' -53.9 NC_005336.1 + 29165 0.66 0.941662
Target:  5'- gGCGCCCcuaaauGGUG-CUcgcgcccuccgaGCUCGUCGUcGCg -3'
miRNA:   3'- -CGCGGGc-----UCACuGA------------CGAGUAGCAaCG- -5'
25488 5' -53.9 NC_005336.1 + 99565 0.67 0.936859
Target:  5'- cGCGCUaCGAcgucGUGGcCUGCUCGagcuUCGUcUGCg -3'
miRNA:   3'- -CGCGG-GCU----CACU-GACGAGU----AGCA-ACG- -5'
25488 5' -53.9 NC_005336.1 + 79892 0.67 0.936859
Target:  5'- -aGCCCGAGaUGguaaaGCcGCUUAUCGagGCg -3'
miRNA:   3'- cgCGGGCUC-AC-----UGaCGAGUAGCaaCG- -5'
25488 5' -53.9 NC_005336.1 + 105256 0.67 0.936859
Target:  5'- cGCGCCCGAGgagucACUGUUC-UCGc--- -3'
miRNA:   3'- -CGCGGGCUCac---UGACGAGuAGCaacg -5'
25488 5' -53.9 NC_005336.1 + 123842 0.67 0.93181
Target:  5'- gGCGCUCG-GUG-CUcgaccaGCUCAUCGccgGCg -3'
miRNA:   3'- -CGCGGGCuCACuGA------CGAGUAGCaa-CG- -5'
25488 5' -53.9 NC_005336.1 + 131144 0.67 0.93181
Target:  5'- cCGCacuCUGAGcGGCUGCUCucaagcUUGUUGCa -3'
miRNA:   3'- cGCG---GGCUCaCUGACGAGu-----AGCAACG- -5'
25488 5' -53.9 NC_005336.1 + 40607 0.67 0.926515
Target:  5'- gGCGCgCCGucguuGUGGCUGCgg--CGgcGCa -3'
miRNA:   3'- -CGCG-GGCu----CACUGACGaguaGCaaCG- -5'
25488 5' -53.9 NC_005336.1 + 26706 0.67 0.920974
Target:  5'- aCGCCCuuGUGGCUGgaCuUCGU-GCg -3'
miRNA:   3'- cGCGGGcuCACUGACgaGuAGCAaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.