miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25489 3' -54.9 NC_005336.1 + 123062 0.66 0.935899
Target:  5'- aCAAGGCGCgCGcGCgcaUGGAGACGCUGc -3'
miRNA:   3'- -GUUCUGCGgGU-UGac-GCUUCUGCGGC- -5'
25489 3' -54.9 NC_005336.1 + 65285 0.66 0.935899
Target:  5'- gAGGGCGCgCGGCUcCGA-GGCGCgCGa -3'
miRNA:   3'- gUUCUGCGgGUUGAcGCUuCUGCG-GC- -5'
25489 3' -54.9 NC_005336.1 + 5538 0.66 0.935899
Target:  5'- -cAGuCGCCCAGguCUaGCGucuGGACGUCGa -3'
miRNA:   3'- guUCuGCGGGUU--GA-CGCu--UCUGCGGC- -5'
25489 3' -54.9 NC_005336.1 + 31372 0.66 0.935899
Target:  5'- aGAGGugcgUGUCCAAgaGCGGgauggggaAGACGCCGc -3'
miRNA:   3'- gUUCU----GCGGGUUgaCGCU--------UCUGCGGC- -5'
25489 3' -54.9 NC_005336.1 + 83789 0.66 0.935899
Target:  5'- -cGGGCGCCUugaucgucgGGCaGCu-GGACGCCGg -3'
miRNA:   3'- guUCUGCGGG---------UUGaCGcuUCUGCGGC- -5'
25489 3' -54.9 NC_005336.1 + 67089 0.66 0.935899
Target:  5'- gCGAGcucaccGCGCCCGGCUGC-AAGGUGCUc -3'
miRNA:   3'- -GUUC------UGCGGGUUGACGcUUCUGCGGc -5'
25489 3' -54.9 NC_005336.1 + 132182 0.66 0.935899
Target:  5'- gCGAGGCGCUCAuaaauCUGCGccacaaAUGCCGc -3'
miRNA:   3'- -GUUCUGCGGGUu----GACGCuuc---UGCGGC- -5'
25489 3' -54.9 NC_005336.1 + 87232 0.66 0.935403
Target:  5'- aCAGGggucgugcuuGCGCCCGucgaugagcacccACUugaGCG-AGACGCCGa -3'
miRNA:   3'- -GUUC----------UGCGGGU-------------UGA---CGCuUCUGCGGC- -5'
25489 3' -54.9 NC_005336.1 + 5862 0.66 0.935403
Target:  5'- gCGAGACGCgCAGCcgcaucaUGCagaccuugccGAAGAgCGCCGu -3'
miRNA:   3'- -GUUCUGCGgGUUG-------ACG----------CUUCU-GCGGC- -5'
25489 3' -54.9 NC_005336.1 + 99657 0.66 0.930822
Target:  5'- -cGGACGCgCGcgcGC-GCGAGGGCGUCu -3'
miRNA:   3'- guUCUGCGgGU---UGaCGCUUCUGCGGc -5'
25489 3' -54.9 NC_005336.1 + 57958 0.66 0.930822
Target:  5'- --uGACgGCaucgaCAACUGCGGcggcgcGGACGCCu -3'
miRNA:   3'- guuCUG-CGg----GUUGACGCU------UCUGCGGc -5'
25489 3' -54.9 NC_005336.1 + 95210 0.66 0.930822
Target:  5'- gAAGAUGaCgCCAGCcGCGA--GCGCCGc -3'
miRNA:   3'- gUUCUGC-G-GGUUGaCGCUucUGCGGC- -5'
25489 3' -54.9 NC_005336.1 + 36420 0.66 0.930822
Target:  5'- aAAGGCGCUCGcgACcGCGA--GCGCCu -3'
miRNA:   3'- gUUCUGCGGGU--UGaCGCUucUGCGGc -5'
25489 3' -54.9 NC_005336.1 + 17746 0.66 0.930822
Target:  5'- cCGAGACGgcguaCCGGCacGCGAGcgcGACGCUGg -3'
miRNA:   3'- -GUUCUGCg----GGUUGa-CGCUU---CUGCGGC- -5'
25489 3' -54.9 NC_005336.1 + 79194 0.66 0.930822
Target:  5'- gAAGuCGCCCucgGACUGCu-GGAaGCCGg -3'
miRNA:   3'- gUUCuGCGGG---UUGACGcuUCUgCGGC- -5'
25489 3' -54.9 NC_005336.1 + 73122 0.66 0.930822
Target:  5'- aGAGcACGCCCAGCggcccGCGcguGCGUCGg -3'
miRNA:   3'- gUUC-UGCGGGUUGa----CGCuucUGCGGC- -5'
25489 3' -54.9 NC_005336.1 + 98883 0.66 0.930822
Target:  5'- aAGGACcuUCCGAUcGCGgcGACGCCa -3'
miRNA:   3'- gUUCUGc-GGGUUGaCGCuuCUGCGGc -5'
25489 3' -54.9 NC_005336.1 + 38353 0.66 0.927658
Target:  5'- gAAGGCGCgCAGCguggGCGugcucggcaacgcGGCGCCGc -3'
miRNA:   3'- gUUCUGCGgGUUGa---CGCuu-----------CUGCGGC- -5'
25489 3' -54.9 NC_005336.1 + 39702 0.66 0.9255
Target:  5'- -cGGGCGCCuCGccGCcGCGcuGGACGCCu -3'
miRNA:   3'- guUCUGCGG-GU--UGaCGCu-UCUGCGGc -5'
25489 3' -54.9 NC_005336.1 + 99 0.66 0.9255
Target:  5'- gAGGAC-UCCGACUccGCGGAGGCGgCa -3'
miRNA:   3'- gUUCUGcGGGUUGA--CGCUUCUGCgGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.